Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.61□□□□□ -1.67
USP39Q53GS9 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
USP39Q53GS9 AL592182.3-201ENST00000642132 3304 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 AC119744.1-201ENST00000454746 1715 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 NUP58P1-201ENST00000502546 1738 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU1-94P-201ENST00000362627 173 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU6-254P-201ENST00000363377 107 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 OR52E6-202ENST00000379946 954 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU6-1160P-201ENST00000384546 104 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU6-1151P-201ENST00000384684 107 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 MIR23B-201ENST00000384832 97 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AL162578.1-201ENST00000406202 378 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU6-373P-201ENST00000411247 98 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNU2-6P-201ENST00000411404 190 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 SNRPFP1-201ENST00000414761 252 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 MRPL50P2-201ENST00000416821 482 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 MTATP6P18-201ENST00000417994 673 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.61□□□□□ -1.67
USP39Q53GS9 RPL22P17-201ENST00000438729 315 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RPS26P2-201ENST00000440331 348 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 BRK1P2-201ENST00000442875 223 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.61□□□□□ -1.67
USP39Q53GS9 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.61□□□□□ -1.67
USP39Q53GS9 SCARNA10-201ENST00000459255 330 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RPL21P129-201ENST00000491732 478 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.61□□□□□ -1.67
USP39Q53GS9 PARP4P3-201ENST00000510265 317 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 RNA5SP360-201ENST00000516555 118 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.61□□□□□ -1.67
USP39Q53GS9 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC090502.2-201ENST00000549267 280 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC093012.1-202ENST00000549403 582 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC093249.1-201ENST00000567049 203 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.61□□□□□ -1.67
USP39Q53GS9 uc_338.5-201ENST00000611839 155 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 DISC2.1-201ENST00000612827 205 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC243654.2-201ENST00000612843 443 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 AC000123.2-201ENST00000623124 461 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 OR11H5P-202ENST00000641612 1325 ntBASIC4.61□□□□□ -1.67
USP39Q53GS9 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USP39Q53GS9 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP39Q53GS9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP39Q53GS9 DDX18P4-201ENST00000511690 1966 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 SNORA37-201ENST00000384504 129 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 RNU6-907P-201ENST00000390924 102 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 RNU6-1158P-201ENST00000391167 107 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 RPL7P25-201ENST00000404151 721 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 MIR548P-201ENST00000408336 84 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 SNRPEP7-201ENST00000438350 220 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 PHBP16-201ENST00000446318 950 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.6□□□□□ -1.67
USP39Q53GS9 RNU7-136P-201ENST00000458819 69 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.6□□□□□ -1.67
USP39Q53GS9 RPL7P19-201ENST00000469948 618 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 UQCRHP4-201ENST00000471686 272 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC105137.1-201ENST00000484355 562 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 RNA5SP401-201ENST00000515920 127 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC107953.1-201ENST00000522216 297 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC022882.1-201ENST00000532142 501 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 CYCSP29-201ENST00000533731 318 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 ELOCP31-201ENST00000540463 467 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.6□□□□□ -1.67
USP39Q53GS9 FKBP1BP1-201ENST00000553366 325 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL389895.1-201ENST00000554127 252 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL355836.1-201ENST00000555951 870 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC090751.1-201ENST00000566966 267 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC006504.6-201ENST00000590142 199 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC008966.2-201ENST00000606157 453 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 MIR7973-1-201ENST00000614683 76 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL158196.1-201ENST00000616786 434 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AC009248.2-201ENST00000619826 254 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL023881.1-201ENST00000621088 301 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 AL445487.1-201ENST00000415694 1580 ntBASIC4.6□□□□□ -1.67
USP39Q53GS9 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms