Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
HOXA4Q00056 Y_RNA.157-201ENST00000363638 102 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 RNU4-48P-201ENST00000365559 182 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 MIR558-201ENST00000384920 94 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 RNU11-4P-201ENST00000391149 133 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AL162578.1-201ENST00000406202 378 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 MIR1271-201ENST00000408537 86 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC092447.6-201ENST00000414578 210 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 RWDD4P2-201ENST00000426392 563 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 PSMA2P3-201ENST00000429685 675 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 FABP7P2-201ENST00000429946 379 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AL359265.2-201ENST00000434367 631 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA4Q00056 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA4Q00056 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA4Q00056 DDX3P2-201ENST00000446138 111 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC073415.1-201ENST00000449240 153 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 ISCUP1-201ENST00000454451 448 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AC093278.1-201ENST00000494700 600 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA4Q00056 SNORD27.1-201ENST00000516319 72 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 Y_RNA.675-201ENST00000516389 149 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXA4Q00056 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AC243972.3-201ENST00000539655 198 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC068831.4-201ENST00000556118 109 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AL133153.1-201ENST00000557756 303 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA4Q00056 AC044792.1-201ENST00000593294 196 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC004908.2-201ENST00000609090 574 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AL136221.1-201ENST00000621449 509 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 MIR4496-201ENST00000635896 61 ntBASIC3.84□□□□□ -1.79
HOXA4Q00056 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA4Q00056 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
HOXA4Q00056 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.84□□□□□ -1.8
HOXA4Q00056 AL359922.3-201ENST00000624779 1670 ntBASIC3.84□□□□□ -1.8
HOXA4Q00056 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.84□□□□□ -1.8
HOXA4Q00056 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.84□□□□□ -1.8
HOXA4Q00056 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.84□□□□□ -1.8
HOXA4Q00056 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
HOXA4Q00056 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA4Q00056 ZNF137P-201ENST00000456718 1920 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC104260.2-201ENST00000623551 3497 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXA4Q00056 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA4Q00056 RNU6-511P-201ENST00000363496 107 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RNU6-263P-201ENST00000363811 107 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 SNORD113.2-201ENST00000364166 89 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RNU6-1078P-201ENST00000364522 103 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC007390.1-201ENST00000415722 356 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AL353678.1-201ENST00000422735 741 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 TAAR7P-201ENST00000436141 242 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RPS17P13-201ENST00000448974 407 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AL513533.1-201ENST00000453728 415 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 CYCSP34-201ENST00000458172 304 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RNU7-59P-201ENST00000459101 61 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RPL5P22-201ENST00000480199 884 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC025164.1-201ENST00000496249 478 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC026427.2-201ENST00000506228 536 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 SNORD116-26-201ENST00000516006 96 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 RNU6-1153P-201ENST00000516760 105 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 HMGB1P41-201ENST00000520234 440 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC011979.2-201ENST00000527568 352 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC125611.2-201ENST00000551907 647 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.83□□□□□ -1.8
HOXA4Q00056 AC013553.2-201ENST00000604244 589 ntBASIC3.83□□□□□ -1.8
HOXA4Q00056 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA4Q00056 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.83□□□□□ -1.8
HOXA4Q00056 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms