Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FAT1P1-201ENST00000406588 507 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RNU2-71P-201ENST00000411395 189 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AC244098.2-201ENST00000422068 99 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA1P55317 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 AC025750.2-201ENST00000442609 450 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RPS26P56-201ENST00000444468 240 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AL096803.2-201ENST00000450032 677 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AC078857.1-201ENST00000469870 667 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RPS4XP6-201ENST00000477670 797 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA1P55317 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 AC006445.2-201ENST00000510061 472 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 MTCYBP37-201ENST00000510642 1133 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 RN7SKP24-201ENST00000515888 284 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RNU6-416P-201ENST00000516265 103 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 RN7SKP244-201ENST00000516513 307 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA1P55317 OR5BN1P-201ENST00000532955 829 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA1P55317 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 AL391156.1-201ENST00000554965 554 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA1P55317 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA1P55317 MTCO3P24-201ENST00000572729 782 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 OR4G1P-201ENST00000588632 938 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 HSPE1P14-201ENST00000605812 302 ntBASIC2.37□□□□□ -2.03
FOXA1P55317 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA1P55317 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA1P55317 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
FOXA1P55317 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 RNU6-444P-201ENST00000383988 108 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 RNU6-1181P-201ENST00000384191 106 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 MIR518C-201ENST00000384822 101 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 MIR27B-201ENST00000385129 97 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P75-201ENST00000396599 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 RPS3AP26-201ENST00000398259 784 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P28-201ENST00000401418 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AL592114.1-201ENST00000403842 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AL138880.1-201ENST00000405824 642 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P66-201ENST00000426566 466 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AL009174.1-201ENST00000426577 416 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA1P55317 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA1P55317 HSFY3P-201ENST00000444242 1191 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.36□□□□□ -2.03
FOXA1P55317 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA1P55317 AC108938.1-201ENST00000451204 136 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 GTF2IP12-201ENST00000456547 356 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P39-201ENST00000463605 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC011979.1-201ENST00000472300 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P93-201ENST00000480465 489 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC233702.1-201ENST00000482905 502 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC087190.1-201ENST00000484462 480 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC093591.1-201ENST00000491435 481 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 RPL21P16-201ENST00000495531 483 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 KLHL2P1-201ENST00000508691 521 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC027338.1-201ENST00000514840 825 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 AC026801.2-201ENST00000515352 425 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 IGKV2D-36-201ENST00000518643 226 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 HSPE1P20-201ENST00000538133 289 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA1P55317 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA1P55317 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 AC016542.1-201ENST00000608259 493 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 MIR7106-201ENST00000612419 65 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC106730.3-201ENST00000624568 641 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC068620.4-201ENST00000636730 1182 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA1P55317 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA1P55317 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA1P55317 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA1P55317 ZNF37BP-203ENST00000452306 1352 ntBASIC2.36□□□□□ -2.03
FOXA1P55317 AC073055.1-201ENST00000456901 1621 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
FOXA1P55317 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA1P55317 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA1P55317 RNU6-1226P-201ENST00000384317 107 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 HMGN2P35-201ENST00000412164 270 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RAD23BP2-201ENST00000416003 1207 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 MRPL50P2-201ENST00000416821 482 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 AL096701.2-201ENST00000416920 238 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RPS3AP9-201ENST00000417027 792 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 ATG3P1-201ENST00000419507 911 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA1P55317 USP9YP36-201ENST00000424581 829 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.35□□□□□ -2.03
FOXA1P55317 RPL17P35-201ENST00000432217 549 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms