Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNA5SP458-201ENST00000516188 119 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 HMGB1P1-201ENST00000522557 636 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AP002770.2-201ENST00000543613 532 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC044913.1-201ENST00000557200 430 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 BNIP3P30-201ENST00000601184 574 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC007621.1-201ENST00000604544 437 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC239868.4-201ENST00000608318 671 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC021851.1-201ENST00000608537 1082 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL020991.1-201ENST00000612314 373 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.88□□□□□ -1.95
COL4A4P53420 AP006248.2-201ENST00000623309 592 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC093648.1-201ENST00000623546 606 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 CTSLP2-204ENST00000629029 392 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC099063.3-201ENST00000642066 185 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 TAB3P1-202ENST00000452645 1634 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 Y_RNA.51-201ENST00000362725 102 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 RPS4XP7-201ENST00000406274 780 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL450338.1-201ENST00000407987 512 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 MTCO1P39-201ENST00000426148 480 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AL445567.1-201ENST00000439121 144 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC007000.2-201ENST00000442564 487 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC124916.1-201ENST00000444020 547 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 MTCYBP3-201ENST00000445588 1137 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 EXTL2P1-201ENST00000446218 416 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 MTND4P18-201ENST00000447010 465 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 CACYBPP2-201ENST00000453625 678 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 RPL21P18-201ENST00000469899 480 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC109927.2-201ENST00000506416 303 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.88□□□□□ -1.95
COL4A4P53420 MTND4P33-201ENST00000556706 766 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC135628.1-201ENST00000568867 534 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 MIR4801-201ENST00000582704 82 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 AC078899.3-201ENST00000599065 212 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC064872.1-201ENST00000604823 1072 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 RBM11P1-201ENST00000604951 799 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AP000254.1-201ENST00000609934 520 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC104073.3-201ENST00000610942 955 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC005609.4-201ENST00000625071 447 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC2.88□□□□□ -1.95
COL4A4P53420 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.88□□□□□ -1.95
COL4A4P53420 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A4P53420 OR10AB1P-202ENST00000641219 1686 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC092593.1-201ENST00000515413 1815 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 RNU6-867P-201ENST00000364956 107 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 BTF3P7-201ENST00000407097 488 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC096533.1-201ENST00000411645 353 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.87□□□□□ -1.95
COL4A4P53420 MTCO3P41-201ENST00000414801 328 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 BX664727.1-201ENST00000416024 466 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 VN1R31P-201ENST00000417498 730 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AL513175.2-201ENST00000422071 443 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC005345.1-201ENST00000431868 217 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC112220.1-201ENST00000434628 355 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 OFD1P7Y-201ENST00000454643 1155 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A4P53420 ATG12P2-201ENST00000456830 416 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC008379.1-201ENST00000463655 464 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC104689.1-201ENST00000473356 768 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 OR9N1P-201ENST00000491296 333 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 RPL7P20-201ENST00000520308 745 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms