Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC090229.1-201ENST00000590983 1609 ntBASIC4.44□□□□□ -1.7
MSX2P35548 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX2P35548 SNORA58B-201ENST00000364259 136 ntBASIC4.44□□□□□ -1.7
MSX2P35548 Y_RNA.231-201ENST00000364358 102 ntBASIC4.44□□□□□ -1.7
MSX2P35548 Y_RNA.234-201ENST00000364409 97 ntBASIC4.44□□□□□ -1.7
MSX2P35548 Y_RNA.367-201ENST00000365544 101 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX2P35548 RNU6-1207P-201ENST00000384343 107 ntBASIC4.44□□□□□ -1.7
MSX2P35548 RNU6-831P-201ENST00000384548 107 ntBASIC4.44□□□□□ -1.7
MSX2P35548 RNU1-82P-201ENST00000390851 165 ntBASIC4.44□□□□□ -1.7
MSX2P35548 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.44□□□□□ -1.7
MSX2P35548 RPL26P29-201ENST00000415623 438 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.44□□□□□ -1.7
MSX2P35548 GPM6BP2-201ENST00000432046 144 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.44□□□□□ -1.7
MSX2P35548 SPRYD7P1-201ENST00000443861 570 ntBASIC4.44□□□□□ -1.7
MSX2P35548 GPM6BP1-201ENST00000446387 144 ntBASIC4.44□□□□□ -1.7
MSX2P35548 MTND3P16-201ENST00000452205 344 ntBASIC4.44□□□□□ -1.7
MSX2P35548 NANOGP10-201ENST00000453325 895 ntBASIC4.44□□□□□ -1.7
MSX2P35548 HMGB1P15-201ENST00000453854 435 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC087879.1-201ENST00000474343 374 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.44□□□□□ -1.7
MSX2P35548 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSX2P35548 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.44□□□□□ -1.7
MSX2P35548 ELOCP31-201ENST00000540463 467 ntBASIC4.44□□□□□ -1.7
MSX2P35548 DYNLL1P4-201ENST00000549314 266 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.44□□□□□ -1.7
MSX2P35548 AC026464.5-201ENST00000562497 722 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AC105224.1-201ENST00000587055 421 ntBASIC4.44□□□□□ -1.7
MSX2P35548 GLUD1P4-201ENST00000590914 418 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC011487.3-201ENST00000593607 453 ntBASIC4.44□□□□□ -1.7
MSX2P35548 RNU6-89P-201ENST00000606519 100 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.44□□□□□ -1.7
MSX2P35548 AC103710.3-201ENST00000608157 948 ntBASIC4.44□□□□□ -1.7
MSX2P35548 uc_338.12-201ENST00000616344 181 ntBASIC4.44□□□□□ -1.7
MSX2P35548 AC090971.5-201ENST00000621102 293 ntBASIC4.44□□□□□ -1.7
MSX2P35548 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSX2P35548 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
MSX2P35548 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.43□□□□□ -1.7
MSX2P35548 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
MSX2P35548 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 MTCO1P9-201ENST00000505577 1534 ntBASIC4.43□□□□□ -1.7
MSX2P35548 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.43□□□□□ -1.7
MSX2P35548 SNURFL-201ENST00000309296 343 ntBASIC4.43□□□□□ -1.7
MSX2P35548 Y_RNA.128-201ENST00000363391 112 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNU6-1243P-201ENST00000364028 107 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNA5SP428-201ENST00000365129 132 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNU4-48P-201ENST00000365559 182 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNU6-474P-201ENST00000384243 107 ntBASIC4.43□□□□□ -1.7
MSX2P35548 Y_RNA.579-201ENST00000390939 94 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AL590762.2-201ENST00000395798 571 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RN7SKP235-201ENST00000410662 305 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RNU6-193P-201ENST00000410977 107 ntBASIC4.43□□□□□ -1.7
MSX2P35548 VDAC1P9-201ENST00000412766 841 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RPS15AP40-201ENST00000419621 391 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC137499.1-201ENST00000427602 88 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC008065.1-201ENST00000428525 348 ntBASIC4.43□□□□□ -1.7
MSX2P35548 RPS20P5-201ENST00000434808 360 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AL356276.2-201ENST00000435919 558 ntBASIC4.43□□□□□ -1.7
MSX2P35548 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 AC114495.1-201ENST00000441274 436 ntBASIC4.43□□□□□ -1.7
MSX2P35548 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 FGF7P3-201ENST00000454645 303 ntBASIC4.43□□□□□ -1.7
MSX2P35548 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 Y_RNA.639-201ENST00000458981 102 ntBASIC4.43□□□□□ -1.7
MSX2P35548 MTND4P17-201ENST00000470444 350 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC087385.1-201ENST00000475062 312 ntBASIC4.43□□□□□ -1.7
MSX2P35548 OR2AO1P-201ENST00000476497 403 ntBASIC4.43□□□□□ -1.7
MSX2P35548 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 TTC39CP1-201ENST00000512513 755 ntBASIC4.43□□□□□ -1.7
MSX2P35548 SUMO2P20-201ENST00000520803 283 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 AC100770.1-201ENST00000532310 322 ntBASIC4.43□□□□□ -1.7
MSX2P35548 OR10G5P-201ENST00000532733 358 ntBASIC4.43□□□□□ -1.7
MSX2P35548 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 AL352979.3-201ENST00000553515 247 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.43□□□□□ -1.7
MSX2P35548 HMGB3P26-201ENST00000560051 582 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.43□□□□□ -1.7
MSX2P35548 AL355802.3-201ENST00000607571 545 ntBASIC4.43□□□□□ -1.7
MSX2P35548 AC008121.3-201ENST00000618726 433 ntBASIC4.43□□□□□ -1.7
MSX2P35548 MIR7154-201ENST00000620673 73 ntBASIC4.43□□□□□ -1.7
MSX2P35548 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms