Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 AC034229.2-201ENST00000566945 2508 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 Y_RNA.143-201ENST00000363520 106 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 RNU6-290P-201ENST00000365212 101 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 SNORD116-18-201ENST00000383961 92 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 Y_RNA.435-201ENST00000384095 112 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 RNU1-77P-201ENST00000390868 162 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 RNU6-700P-201ENST00000391043 107 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL030996.1-201ENST00000411430 235 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 HMGA1P8-201ENST00000414130 321 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 CYCSP52-201ENST00000422857 310 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.14□□□□□ -1.59
COL8A1P27658 VTI1BP4-201ENST00000427516 527 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.14□□□□□ -1.59
COL8A1P27658 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.14□□□□□ -1.59
COL8A1P27658 CYCSP12-201ENST00000437729 300 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 RPL31P60-201ENST00000478450 367 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 AC005798.1-201ENST00000513715 387 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 IGLV3-6-201ENST00000523937 250 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.14□□□□□ -1.59
COL8A1P27658 AL133271.1-201ENST00000538229 291 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.14□□□□□ -1.59
COL8A1P27658 AC027229.1-201ENST00000583887 253 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.14□□□□□ -1.59
COL8A1P27658 AL670379.6-201ENST00000603753 252 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL670379.1-201ENST00000604752 252 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL670379.5-201ENST00000605253 252 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL670379.8-201ENST00000605353 252 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL121917.1-203ENST00000605534 577 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 AL670379.7-201ENST00000605823 252 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.14□□□□□ -1.59
COL8A1P27658 AP002512.4-202ENST00000641599 4530 ntBASIC5.14□□□□□ -1.59
COL8A1P27658 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL8A1P27658 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.14□□□□□ -1.59
COL8A1P27658 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
COL8A1P27658 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL8A1P27658 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.13□□□□□ -1.59
COL8A1P27658 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.13□□□□□ -1.59
COL8A1P27658 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.13□□□□□ -1.59
COL8A1P27658 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 AL137003.2-201ENST00000606924 2538 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL8A1P27658 RNA5SP319-201ENST00000362768 119 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 RNU4-44P-201ENST00000363050 141 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 RNA5SP234-201ENST00000363916 119 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 RNU105B-201ENST00000364478 208 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 Y_RNA.272-201ENST00000364696 102 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.13□□□□□ -1.59
COL8A1P27658 MTCYBP2-201ENST00000407745 171 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 Y_RNA.602-201ENST00000410535 92 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 EI24P1-201ENST00000416584 867 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.13□□□□□ -1.59
COL8A1P27658 MTCO1P5-201ENST00000433573 344 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 CYCSP6-201ENST00000434498 302 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 PLGLA-201ENST00000465668 449 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.13□□□□□ -1.59
COL8A1P27658 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.13□□□□□ -1.59
COL8A1P27658 RNU6-496P-201ENST00000516145 99 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.13□□□□□ -1.59
COL8A1P27658 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.13□□□□□ -1.59
COL8A1P27658 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.13□□□□□ -1.59
COL8A1P27658 AL137067.2-201ENST00000621202 131 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.13□□□□□ -1.59
COL8A1P27658 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.13□□□□□ -1.59
COL8A1P27658 OR4G2P-202ENST00000641004 1759 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.13□□□□□ -1.59
COL8A1P27658 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL8A1P27658 AC073365.1-203ENST00000641055 1992 ntBASIC5.13□□□□□ -1.59
COL8A1P27658 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL8A1P27658 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL8A1P27658 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL8A1P27658 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.12□□□□□ -1.59
COL8A1P27658 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.12□□□□□ -1.59
COL8A1P27658 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL8A1P27658 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.12□□□□□ -1.59
COL8A1P27658 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL8A1P27658 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms