Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 HMGB3P15-201ENST00000507326 574 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC010587.2-201ENST00000511727 448 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.02□□□□□ -1.93
SDC1P18827 DEFB131D-201ENST00000526803 184 ntBASIC3.02□□□□□ -1.93
SDC1P18827 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.02□□□□□ -1.93
SDC1P18827 AC010198.2-201ENST00000550612 259 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 CYCSP2-201ENST00000558168 301 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.02□□□□□ -1.93
SDC1P18827 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.02□□□□□ -1.93
SDC1P18827 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.02□□□□□ -1.93
SDC1P18827 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.02□□□□□ -1.93
SDC1P18827 VN1R78P-201ENST00000597393 564 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AL020997.2-201ENST00000602607 184 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC100793.4-201ENST00000613683 429 ntBASIC3.02□□□□□ -1.93
SDC1P18827 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.02□□□□□ -1.93
SDC1P18827 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC004925.1-201ENST00000624256 2706 ntBASIC3.02□□□□□ -1.93
SDC1P18827 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.02□□□□□ -1.93
SDC1P18827 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SDC1P18827 MTND5P27-201ENST00000428871 1720 ntBASIC3.02□□□□□ -1.93
SDC1P18827 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 RPL21P3-201ENST00000395517 478 ntBASIC3.01□□□□□ -1.93
SDC1P18827 ANAPC10P1-201ENST00000395991 556 ntBASIC3.01□□□□□ -1.93
SDC1P18827 PTMAP2-201ENST00000397627 327 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 MTCO3P12-201ENST00000416718 547 ntBASIC3.01□□□□□ -1.93
SDC1P18827 RPL7P30-201ENST00000420888 709 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
SDC1P18827 ELOCP23-201ENST00000452014 332 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 RNU7-136P-201ENST00000458819 69 ntBASIC3.01□□□□□ -1.93
SDC1P18827 SNORD11.1-201ENST00000459482 85 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC146507.2-201ENST00000460608 476 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AP001992.1-205ENST00000462248 379 ntBASIC3.01□□□□□ -1.93
SDC1P18827 RPL21P10-201ENST00000463521 490 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC097493.1-201ENST00000463958 372 ntBASIC3.01□□□□□ -1.93
SDC1P18827 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.01□□□□□ -1.93
SDC1P18827 RN7SL293P-201ENST00000481765 281 ntBASIC3.01□□□□□ -1.93
SDC1P18827 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.01□□□□□ -1.93
SDC1P18827 AC096751.1-202ENST00000502691 1067 ntBASIC3.01□□□□□ -1.93
SDC1P18827 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.01□□□□□ -1.93
SDC1P18827 AC022861.1-201ENST00000522981 663 ntBASIC3.01□□□□□ -1.93
SDC1P18827 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SDC1P18827 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 AC009712.1-201ENST00000564938 316 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC034105.4-201ENST00000568304 277 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC012182.1-201ENST00000570133 895 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.01□□□□□ -1.93
SDC1P18827 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 AL109618.2-201ENST00000605527 211 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC107952.2-201ENST00000606048 486 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC080013.4-201ENST00000607624 649 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 AC245297.2-201ENST00000610119 565 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC097478.2-201ENST00000610572 514 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.01□□□□□ -1.93
SDC1P18827 AP000484.1-201ENST00000620067 1252 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AL353748.2-201ENST00000622148 471 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC231657.1-201ENST00000624313 397 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AL079343.1-201ENST00000572358 1771 ntBASIC3.01□□□□□ -1.93
SDC1P18827 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 AC116096.1-201ENST00000566804 2314 ntBASIC3.01□□□□□ -1.93
SDC1P18827 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
SDC1P18827 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3□□□□□ -1.93
SDC1P18827 AC005183.1-201ENST00000603687 1979 ntBASIC3□□□□□ -1.93
SDC1P18827 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3□□□□□ -1.93
SDC1P18827 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3□□□□□ -1.93
SDC1P18827 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3□□□□□ -1.93
SDC1P18827 AP000567.1-201ENST00000406413 156 ntBASIC3□□□□□ -1.93
SDC1P18827 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3□□□□□ -1.93
SDC1P18827 TPMTP2-201ENST00000414372 726 ntBASIC3□□□□□ -1.93
SDC1P18827 AC245054.2-201ENST00000415639 319 ntBASIC3□□□□□ -1.93
SDC1P18827 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3□□□□□ -1.93
SDC1P18827 AC099677.1-201ENST00000420575 175 ntBASIC3□□□□□ -1.93
SDC1P18827 MTND4P6-201ENST00000438297 472 ntBASIC3□□□□□ -1.93
SDC1P18827 MTND3P1-201ENST00000441336 220 ntBASIC3□□□□□ -1.93
SDC1P18827 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3□□□□□ -1.93
SDC1P18827 UQCRHP3-201ENST00000451503 251 ntBASIC3□□□□□ -1.93
SDC1P18827 Z82190.1-201ENST00000454534 490 ntBASIC3□□□□□ -1.93
SDC1P18827 RN7SL75P-201ENST00000461926 281 ntBASIC3□□□□□ -1.93
SDC1P18827 RPS4XP10-201ENST00000465034 731 ntBASIC3□□□□□ -1.93
SDC1P18827 RPL7P18-201ENST00000478965 734 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms