Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 snoU109.1-201ENST00000459339 135 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC026410.2-201ENST00000460281 156 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RPL38P1-201ENST00000460914 211 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RPS3AP17-201ENST00000472594 777 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC010301.1-201ENST00000473936 355 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RPL7P24-201ENST00000493052 752 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 SNORA18.6-201ENST00000516792 115 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 MTND4LP18-201ENST00000526864 291 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC006960.3-201ENST00000561845 705 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 SNORA59B-202ENST00000578183 701 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RN7SL703P-201ENST00000578485 302 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 MAGOH2P-202ENST00000584384 429 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC008250.2-201ENST00000615261 205 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AL591424.2-201ENST00000617023 128 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC108479.2-201ENST00000617314 601 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 MIR3688-2-201ENST00000636963 87 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.48□□□□□ -1.85
LMX1BO60663 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 AL049555.1-201ENST00000562834 1933 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 RNA5SP502-201ENST00000362694 119 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 U8.3-201ENST00000363321 132 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 SNORD46.1-201ENST00000364139 104 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 RNA5SP387-201ENST00000364226 106 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 CALM2P3-201ENST00000400429 449 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 CIR1P3-201ENST00000405137 479 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 HSPE1P12-201ENST00000412576 301 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 C1DP2-201ENST00000418167 426 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC000111.3-201ENST00000433478 193 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 GOT2P5-201ENST00000433995 546 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 AL121601.2-201ENST00000438019 707 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AF228730.2-201ENST00000438784 848 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL356535.1-201ENST00000440335 398 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 WASF1P1-201ENST00000447560 1131 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 Z99127.3-201ENST00000448158 395 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 ARPC3P5-201ENST00000448802 534 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 RPS11P1-201ENST00000451072 473 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL121877.1-201ENST00000453704 622 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 Z82190.1-201ENST00000454534 490 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 RPL23AP2-201ENST00000471227 466 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC017015.1-201ENST00000477387 286 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC106872.3-201ENST00000495104 446 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC034159.1-201ENST00000513885 583 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 RNU2-46P-201ENST00000517038 113 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 COX6CP8-201ENST00000522620 226 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 HSPA8P13-201ENST00000523715 472 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.47□□□□□ -1.85
LMX1BO60663 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.47□□□□□ -1.85
LMX1BO60663 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 RPL21P5-201ENST00000554662 472 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 HSPE1P5-201ENST00000561489 272 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 AC005255.1-201ENST00000593748 216 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC112230.1-201ENST00000604342 547 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL139286.1-201ENST00000604465 483 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AP000860.1-201ENST00000605250 559 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AL357078.3-201ENST00000607528 618 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC091304.9-201ENST00000612091 226 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms