Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 NIPA2P2-201ENST00000496376 1083 ntBASIC4□□□□□ -1.77
HOXC11O43248 UBE2CP3-201ENST00000502715 450 ntBASIC4□□□□□ -1.77
HOXC11O43248 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 AC116347.2-201ENST00000514912 523 ntBASIC4□□□□□ -1.77
HOXC11O43248 SCARNA14-201ENST00000516903 136 ntBASIC4□□□□□ -1.77
HOXC11O43248 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4□□□□□ -1.77
HOXC11O43248 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4□□□□□ -1.77
HOXC11O43248 AP001029.3-201ENST00000588063 596 ntBASIC4□□□□□ -1.77
HOXC11O43248 TPMTP1-201ENST00000592307 737 ntBASIC4□□□□□ -1.77
HOXC11O43248 AC008739.3-201ENST00000603262 127 ntBASIC4□□□□□ -1.77
HOXC11O43248 SNORA51-201ENST00000606420 132 ntBASIC4□□□□□ -1.77
HOXC11O43248 AC091965.4-201ENST00000607691 587 ntBASIC4□□□□□ -1.77
HOXC11O43248 MIR6130-201ENST00000619419 109 ntBASIC4□□□□□ -1.77
HOXC11O43248 AC009268.2-201ENST00000621925 457 ntBASIC4□□□□□ -1.77
HOXC11O43248 AC095031.1-201ENST00000623685 672 ntBASIC4□□□□□ -1.77
HOXC11O43248 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4□□□□□ -1.77
HOXC11O43248 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC11O43248 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4□□□□□ -1.77
HOXC11O43248 ZNF962P-201ENST00000443465 3140 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXC11O43248 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 SNORA71.3-201ENST00000362582 128 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 SNORA73.2-201ENST00000364946 201 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXC11O43248 RNU1-89P-201ENST00000384592 164 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 Y_RNA.548-201ENST00000384656 105 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 MIR199A2-201ENST00000385289 110 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 Z98941.1-201ENST00000407764 100 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 AL445669.1-201ENST00000426743 755 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 GOT2P5-201ENST00000433995 546 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AL445567.1-201ENST00000439121 144 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 RPL36AP33-201ENST00000450395 310 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC11O43248 RPL7L1P8-201ENST00000469911 741 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC11O43248 RPS3AP43-201ENST00000479743 781 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
HOXC11O43248 DSTNP2-201ENST00000504533 515 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC112198.1-201ENST00000505369 1220 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 IGKV2-38-201ENST00000517443 247 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 IGKV2-23-201ENST00000518729 323 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC106038.2-201ENST00000520706 568 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXC11O43248 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC135628.1-201ENST00000568867 534 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC060771.1-201ENST00000582031 164 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 MIR4307-201ENST00000582802 84 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXC11O43248 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXC11O43248 AC012603.1-201ENST00000606424 528 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC011460.1-201ENST00000636268 1834 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXC11O43248 AC009902.3-201ENST00000606235 2172 ntBASIC3.99□□□□□ -1.77
HOXC11O43248 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC11O43248 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC11O43248 AC092125.1-201ENST00000562568 1995 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AC005832.2-201ENST00000538921 1430 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC11O43248 LINC02471-203ENST00000641941 4752 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC11O43248 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 RNU6-637P-201ENST00000384050 107 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AL136372.1-201ENST00000403060 228 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 MTND1P21-201ENST00000412991 285 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AL591419.1-201ENST00000427423 339 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 AL365184.2-201ENST00000431139 435 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AC024082.2-201ENST00000434771 238 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC11O43248 HMGB1P37-201ENST00000439613 609 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 UBE2D3P4-201ENST00000441973 436 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXC11O43248 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXC11O43248 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXC11O43248 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXC11O43248 AC097262.1-201ENST00000452559 548 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 AL133162.1-201ENST00000463228 453 ntBASIC3.98□□□□□ -1.77
HOXC11O43248 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms