Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 USP8P1-201ENST00000494673 3183 ntBASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TRAV40A0A0B4J280 Z99496.1-201ENST00000469424 1477 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC130650.2-201ENST00000618736 2403 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RNU4-68P-201ENST00000364314 141 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SNORA72.3-201ENST00000365074 132 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 U3.15-201ENST00000365398 212 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SUGT1P1-201ENST00000379514 476 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 Y_RNA.493-201ENST00000384422 102 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 MIR513B-201ENST00000385136 84 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SNORA11.2-201ENST00000408318 127 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RNU4-78P-201ENST00000410940 126 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC245054.2-201ENST00000415639 319 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 Z75741.2-201ENST00000417272 1167 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC007435.1-201ENST00000421086 415 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AL513175.2-201ENST00000422071 443 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 MTCO2P17-201ENST00000424336 677 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 DPRXP1-201ENST00000426312 460 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 PSMA2P3-201ENST00000429685 675 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 OR2B8P-201ENST00000432841 938 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 MTCO2P20-201ENST00000437339 673 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC092393.1-201ENST00000439625 742 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC093156.1-201ENST00000440382 670 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AL135938.1-201ENST00000443141 297 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 CFTRP1-201ENST00000456646 183 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SNORD108-201ENST00000459332 71 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RN7SL75P-201ENST00000461926 281 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 PABPC1P3-201ENST00000469174 459 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RPL21P103-201ENST00000479921 488 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC013828.1-201ENST00000481845 158 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 MTCYBP17-201ENST00000503579 789 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC020699.1-201ENST00000505161 445 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC114322.1-201ENST00000506771 926 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC021146.8-201ENST00000507455 733 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC104057.1-201ENST00000515547 497 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RNU4-60P-201ENST00000517239 135 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 OR8K4P-201ENST00000534608 872 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC074029.1-201ENST00000552531 1044 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC091057.2-201ENST00000602594 792 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 LLPHP1-201ENST00000603571 367 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 RPP40P2-201ENST00000603596 712 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC026790.2-201ENST00000606282 430 ntBASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.39□□□□□ -2.03
TRAV40A0A0B4J280 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AP000568.1-201ENST00000282964 442 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 Y_RNA.192-201ENST00000363977 102 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-629P-201ENST00000384061 103 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 Y_RNA.500-201ENST00000384466 111 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-851P-201ENST00000384565 107 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 SSXP10-201ENST00000402595 565 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AL355379.1-201ENST00000405542 640 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 MTATP6P20-201ENST00000414147 562 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 FNDC3CP-201ENST00000420795 1155 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 MTND2P5-201ENST00000432656 1006 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AC236972.1-201ENST00000433225 199 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AC105272.1-201ENST00000438604 198 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 MTCO1P14-201ENST00000441695 1559 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RPS26P56-201ENST00000444468 240 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AL590399.6-201ENST00000446396 307 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 PTENP1-201ENST00000447117 1215 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 HMGN2P21-201ENST00000447764 270 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RPL37P4-201ENST00000448908 268 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 RFC5P1-201ENST00000454419 874 ntBASIC2.38□□□□□ -2.03
TRAV40A0A0B4J280 NECAP1P2-201ENST00000455668 727 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms