Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU6-263P-201ENST00000363811 107 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 SNORA70.9-201ENST00000384370 135 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RNU6-33P-201ENST00000384793 107 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 SNORD73A-201ENST00000386062 65 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RPS21P8-201ENST00000413365 247 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AL590664.1-201ENST00000448065 339 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RPS11P1-201ENST00000451072 473 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RPL37P6-202ENST00000464216 403 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 MTND3P25-201ENST00000509243 135 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC008716.1-201ENST00000511084 513 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 Y_RNA.700-201ENST00000516806 100 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC015720.2-201ENST00000567709 334 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RPL23AP87-202ENST00000573039 466 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC012669.1-201ENST00000603209 283 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC006023.2-201ENST00000609916 167 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AL159153.1-201ENST00000619688 317 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC007938.2-201ENST00000604666 2634 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 AC007159.1-201ENST00000566529 4706 ntBASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIMD1Q9UGP4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RNU6-200P-201ENST00000364743 107 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RNU6-837P-201ENST00000391056 108 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 MIR548M-201ENST00000408260 86 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 U3.35-201ENST00000408405 208 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RNU6-712P-201ENST00000410558 100 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RNU4-78P-201ENST00000410940 126 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 NME1P1-201ENST00000420914 382 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 MTND5P6-201ENST00000422338 1798 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 ZNF72P-201ENST00000425869 1908 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 GEMIN8P3-201ENST00000445417 720 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AL360271.2-201ENST00000447710 161 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 MTND4LP30-201ENST00000454092 297 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RN7SL329P-201ENST00000467740 299 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RNU6-182P-201ENST00000516970 105 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RRN3P3-201ENST00000549207 578 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 BCLAF1P2-201ENST00000624956 2609 ntBASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIMD1Q9UGP4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 RNU6-1249P-201ENST00000363237 111 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AL591034.2-201ENST00000402839 359 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AL353621.1-201ENST00000418219 243 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 CYP4F30P-202ENST00000420048 405 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AC090804.1-201ENST00000448870 490 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 snoU13.3-201ENST00000459441 104 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AC005532.2-201ENST00000467154 373 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 NDUFB4P9-201ENST00000511646 388 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 GMPSP1-201ENST00000514075 579 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 RN7SKP67-201ENST00000515905 235 ntBASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.11□□□□□ -1.43
LIMD1Q9UGP4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms