Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL590099.1-201ENST00000615276 138 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AC079597.1-201ENST00000624306 508 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AL359740.1-201ENST00000624340 592 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AC055839.1-201ENST00000634467 498 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AC010149.2-201ENST00000637608 315 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AC083843.3-201ENST00000623679 2186 ntBASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PAAF1Q9BRP4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC027287.1-201ENST00000553115 1453 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 MTND5P29-201ENST00000458676 1807 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 MIR208A-201ENST00000362287 71 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 MIR199A2-201ENST00000385289 110 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 RPL21P17-201ENST00000397467 475 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 Y_RNA.619-201ENST00000410951 90 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC073614.1-201ENST00000438690 650 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL022238.1-201ENST00000442557 355 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC112653.1-201ENST00000443851 386 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL353691.1-201ENST00000451332 387 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 TPT1P7-201ENST00000458300 517 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC021382.1-201ENST00000483523 359 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 UBE2CP3-201ENST00000502715 450 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC006499.6-201ENST00000511169 607 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 SETP2-201ENST00000553886 926 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 RPL21P5-201ENST00000554662 472 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL157394.1-201ENST00000562983 1224 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 SNORA51-201ENST00000606420 132 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC092354.2-201ENST00000607786 514 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC018755.4-201ENST00000619715 454 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC079684.1-201ENST00000621405 437 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AC110994.2-201ENST00000635481 492 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL034408.1-202ENST00000636088 415 ntBASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PAAF1Q9BRP4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 RNY4P34-201ENST00000364779 95 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 RNU6-297P-201ENST00000384636 107 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 MIR449B-201ENST00000384995 97 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 U3.20-201ENST00000390909 217 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 RNU6-837P-201ENST00000391056 108 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 MRPL42P2-201ENST00000403169 426 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC108734.1-201ENST00000439549 399 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC069285.2-201ENST00000440210 275 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 SNORA18.6-201ENST00000516792 115 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC026403.1-201ENST00000518938 295 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AP000907.2-201ENST00000530827 353 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 GNRHR2P1-201ENST00000555315 631 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 MIR3682-201ENST00000581338 84 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC010680.3-201ENST00000604215 520 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AL049634.3-201ENST00000604968 457 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC055876.5-201ENST00000605667 259 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC012603.1-201ENST00000606424 528 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC098614.4-201ENST00000607601 462 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC103710.1-201ENST00000610003 901 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC109347.2-201ENST00000610220 349 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC138749.5-201ENST00000611461 208 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC116165.2-201ENST00000616705 206 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AL591424.2-201ENST00000617023 128 ntBASIC4.11□□□□□ -1.75
PAAF1Q9BRP4 AC006065.5-201ENST00000623427 349 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms