Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 AC092125.1-201ENST00000562568 1995 ntBASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.04□□□□□ -1.6
SMC1BQ8NDV3 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 GNG5P1-201ENST00000255500 204 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RPL21P17-201ENST00000397467 475 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RNU2-15P-201ENST00000410692 191 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AL359704.1-201ENST00000411586 781 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RPS20P14-201ENST00000412545 360 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 SYF2P2-201ENST00000417620 583 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 NPM1P49-201ENST00000448027 714 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 PSPHP1-201ENST00000450062 261 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RPS27AP1-201ENST00000475545 471 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RN7SL293P-201ENST00000481765 281 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 CENPUP2-201ENST00000555897 1186 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC087477.6-201ENST00000559595 843 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AL606834.2-201ENST00000602954 668 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC090517.2-201ENST00000614966 680 ntBASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMC1BQ8NDV3 AC027290.2-201ENST00000623210 18662 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 ASNSP1-201ENST00000518311 1939 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RNA5SP258-201ENST00000362750 119 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RNU1-20P-201ENST00000363314 162 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 U8.3-201ENST00000363321 132 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RNU6-97P-201ENST00000363387 104 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 Y_RNA.234-201ENST00000364409 97 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RNU6-1207P-201ENST00000384343 107 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 U8.11-201ENST00000384699 133 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 U8.12-201ENST00000384701 133 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 MIR30B-201ENST00000384850 88 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 GSTA9P-201ENST00000406231 611 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 MIR1250-201ENST00000408098 113 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 MTND1P21-201ENST00000412991 285 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 BX295541.1-201ENST00000417774 250 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AL139415.2-201ENST00000431968 163 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RPL23AP46-201ENST00000438548 490 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 NANOGP10-201ENST00000453325 895 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 U8.18-201ENST00000459285 133 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RPL35AP15-201ENST00000468042 339 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 RPS26P28-201ENST00000470806 348 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 KCTD9P5-201ENST00000504141 1170 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC010493.1-201ENST00000513479 292 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC022616.6-201ENST00000520479 119 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AP003122.4-201ENST00000530980 758 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 CYCSP30-201ENST00000546447 172 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC124947.2-202ENST00000552735 133 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 AC136475.10-201ENST00000620253 385 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 MIR3651-201ENST00000630427 90 ntBASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.02□□□□□ -1.61
SMC1BQ8NDV3 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SMC1BQ8NDV3 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SMC1BQ8NDV3 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms