Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC009646.1-201ENST00000510455 318 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 NARSP2-201ENST00000518524 679 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC093012.1-202ENST00000549403 582 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL359212.1-201ENST00000556608 614 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC009117.1-201ENST00000563948 554 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AP002360.4-201ENST00000606980 481 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC068944.2-201ENST00000610373 403 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL355810.1-201ENST00000614629 552 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AL591926.8-201ENST00000616876 211 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 AC116096.1-201ENST00000566804 2314 ntBASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC28AQ8IWP9 TNPO1P3-201ENST00000436471 2662 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 BRAFP1-201ENST00000445336 2703 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNU1-15P-201ENST00000353977 144 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.9-201ENST00000362354 101 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-600P-201ENST00000362524 99 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-1120P-201ENST00000362988 108 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 Y_RNA.372-201ENST00000365599 102 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNU1-39P-201ENST00000383897 165 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 SNORA2.3-201ENST00000383920 135 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 MIR143-201ENST00000385300 106 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 SNORA17A-201ENST00000391185 133 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 CIR1P3-201ENST00000405137 479 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AL807761.1-201ENST00000417622 171 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 EI24P4-201ENST00000423683 1078 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RPL23AP30-201ENST00000432419 501 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 CYCSP43-201ENST00000438233 310 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RPL23AP20-201ENST00000447965 421 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC003071.1-201ENST00000451219 789 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 MTND2P24-201ENST00000453434 806 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AL133445.1-201ENST00000467051 452 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RPL23AP55-201ENST00000498163 452 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 GMPSP1-201ENST00000514075 579 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 RNU6-390P-201ENST00000516259 103 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 HMGB1P41-201ENST00000520234 440 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC021006.3-201ENST00000530771 192 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AP001330.4-201ENST00000604350 154 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC104695.2-201ENST00000605056 775 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 Z84480.1-201ENST00000605131 311 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC012603.1-201ENST00000606424 528 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 BX323046.1-201ENST00000610145 535 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 SDR42E1P2-201ENST00000614861 481 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AL391261.4-201ENST00000616012 481 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 U7.8-201ENST00000619968 63 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC139792.3-201ENST00000623525 224 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC110801.1-201ENST00000623590 212 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 SNORA17.5-201ENST00000630429 132 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 SDAD1P2-201ENST00000441308 2028 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 MAPK10-372ENST00000641954 3413 ntBASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC28AQ8IWP9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 AC066616.2-201ENST00000559334 1481 ntBASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC28AQ8IWP9 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms