Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RPL23AP30-201ENST00000432419 501 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 SNRPGP6-201ENST00000451124 220 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 SAP18P1-201ENST00000512058 390 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.24□□□□□ -1.57
SF3A1Q15459 RNU6-410P-201ENST00000517006 107 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 TPRKBP2-201ENST00000565969 475 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 MIR4737-201ENST00000583979 81 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.24□□□□□ -1.57
SF3A1Q15459 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.24□□□□□ -1.57
SF3A1Q15459 U4.5-201ENST00000617137 123 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 AL160394.1-201ENST00000624765 724 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 U3.53-201ENST00000628922 216 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SF3A1Q15459 AC139769.1-204ENST00000472297 1931 ntBASIC5.24□□□□□ -1.57
SF3A1Q15459 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SF3A1Q15459 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.24□□□□□ -1.57
SF3A1Q15459 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SF3A1Q15459 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
SF3A1Q15459 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
SF3A1Q15459 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SF3A1Q15459 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC067945.1-201ENST00000342609 618 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 RNU1-39P-201ENST00000383897 165 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RNU6-39P-201ENST00000384344 107 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SF3A1Q15459 MIR548F1-201ENST00000408667 84 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RNU2-36P-201ENST00000410361 191 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RPL26P29-201ENST00000415623 438 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC069157.1-201ENST00000421749 137 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AL360081.1-201ENST00000428299 555 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 CYCSP43-201ENST00000438233 310 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RPL26P6-201ENST00000440913 438 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 RPL38P1-201ENST00000460914 211 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 CEACAMP10-202ENST00000495431 496 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 OR51K1P-201ENST00000510214 950 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AL117351.2-201ENST00000513571 157 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RNA5SP497-201ENST00000516081 97 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RNU2-58P-201ENST00000516403 183 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 SCARNA24.1-201ENST00000516465 137 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 MTND4LP26-201ENST00000518144 282 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 ARL2BPP2-201ENST00000550907 489 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC098848.2-201ENST00000588023 330 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 SLC25A36P1-201ENST00000590111 465 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 GLUD1P4-201ENST00000590914 418 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 RPL26P30-202ENST00000602923 645 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.23□□□□□ -1.57
SF3A1Q15459 FRG1KP-201ENST00000623592 341 ntBASIC5.23□□□□□ -1.57
SF3A1Q15459 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.23□□□□□ -1.57
SF3A1Q15459 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SF3A1Q15459 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.23□□□□□ -1.57
SF3A1Q15459 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 CR848007.1-201ENST00000442354 1699 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SF3A1Q15459 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.22□□□□□ -1.57
SF3A1Q15459 AC012618.3-205ENST00000637896 1496 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SF3A1Q15459 RNU5A-1-201ENST00000362698 116 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 RNU6-511P-201ENST00000363496 107 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 SNORA71.2-201ENST00000364941 134 ntBASIC5.22□□□□□ -1.57
SF3A1Q15459 AL133412.1-201ENST00000380194 2992 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms