Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SNORA62.6-201ENST00000606322 83 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 AC006329.2-201ENST00000611491 394 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 MIR486-1-201ENST00000612171 68 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PTPN9P43378 AC009509.4-201ENST00000619202 509 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 AC079684.1-201ENST00000621405 437 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.97□□□□□ -1.77
PTPN9P43378 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTPN9P43378 AC066616.2-201ENST00000559334 1481 ntBASIC3.97□□□□□ -1.77
PTPN9P43378 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PTPN9P43378 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.97□□□□□ -1.77
PTPN9P43378 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PTPN9P43378 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.97□□□□□ -1.77
PTPN9P43378 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
PTPN9P43378 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.96□□□□□ -1.77
PTPN9P43378 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PTPN9P43378 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 RNA5SP515-201ENST00000364570 118 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTPN9P43378 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 RNU1-89P-201ENST00000384592 164 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 HMGN2P8-201ENST00000391458 268 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AL138880.1-201ENST00000405824 642 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 Z98941.1-201ENST00000407764 100 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RN7SKP56-201ENST00000410513 331 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.96□□□□□ -1.78
PTPN9P43378 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 Z95327.1-201ENST00000446082 482 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC239367.2-201ENST00000447309 705 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RPL7P52-201ENST00000449200 742 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 DNAJC19P1-201ENST00000455312 319 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 SNRPGP5-201ENST00000456003 220 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 snoU13.8-201ENST00000458890 104 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 HMGB1P36-201ENST00000487709 576 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 COX7A2P2-201ENST00000505291 250 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
PTPN9P43378 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTPN9P43378 AC022447.1-201ENST00000515358 464 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RNU6-27P-201ENST00000516146 107 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RNA5SP208-201ENST00000516156 78 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 RNU6-1003P-201ENST00000517099 105 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PTPN9P43378 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC024224.1-201ENST00000538284 609 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC107954.1-201ENST00000565906 727 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC006362.1-201ENST00000567392 174 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.96□□□□□ -1.78
PTPN9P43378 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC022916.3-201ENST00000592961 742 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 AC239868.4-201ENST00000608318 671 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC100793.4-201ENST00000613683 429 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC006065.5-201ENST00000623427 349 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 AC091925.2-201ENST00000625059 256 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 EXOC5P1-201ENST00000510543 1969 ntBASIC3.96□□□□□ -1.78
PTPN9P43378 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PTPN9P43378 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.96□□□□□ -1.78
PTPN9P43378 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PTPN9P43378 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.95□□□□□ -1.78
PTPN9P43378 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 RNU6-989P-201ENST00000362756 107 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 Y_RNA.234-201ENST00000364409 97 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 RNU5E-5P-201ENST00000365379 116 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 U3.15-201ENST00000365398 212 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 Y_RNA.493-201ENST00000384422 102 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 SNORD115.1-201ENST00000391109 76 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 MTCYBP36-201ENST00000404146 440 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 CDK8P2-201ENST00000415020 547 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 FTH1P6-201ENST00000430768 320 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.95□□□□□ -1.78
PTPN9P43378 MRPS18BP2-201ENST00000434310 759 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.95□□□□□ -1.78
PTPN9P43378 SKP1P1-201ENST00000438081 489 ntBASIC3.95□□□□□ -1.78
PTPN9P43378 RPL7P36-201ENST00000444633 681 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms