Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
COL6A3P12111 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.05□□□□□ -2.08
COL6A3P12111 AL138799.3-201ENST00000438968 350 ntBASIC2.05□□□□□ -2.08
COL6A3P12111 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.05□□□□□ -2.08
COL6A3P12111 RNU6-1223P-201ENST00000517124 104 ntBASIC2.05□□□□□ -2.08
COL6A3P12111 OR4R2P-201ENST00000530815 597 ntBASIC2.05□□□□□ -2.08
COL6A3P12111 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.05□□□□□ -2.08
COL6A3P12111 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
COL6A3P12111 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A3P12111 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.04□□□□□ -2.08
COL6A3P12111 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC2.04□□□□□ -2.08
COL6A3P12111 MTAPP1-201ENST00000489154 819 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC104564.1-201ENST00000493028 407 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 USP9YP5-201ENST00000511770 630 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 RFPL1S-203ENST00000539579 330 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A3P12111 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.04□□□□□ -2.08
COL6A3P12111 AC006116.7-201ENST00000590141 756 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.04□□□□□ -2.08
COL6A3P12111 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A3P12111 MTND5P27-201ENST00000428871 1720 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
COL6A3P12111 Y_RNA.393-201ENST00000383936 102 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 MTCYBP7-201ENST00000419540 1134 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AL356806.1-201ENST00000422524 916 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.04□□□□□ -2.08
COL6A3P12111 AC010678.1-201ENST00000614118 713 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.04□□□□□ -2.08
COL6A3P12111 XPOTP1-201ENST00000443317 2398 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A3P12111 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
COL6A3P12111 ARPC3P1-201ENST00000437218 533 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC009969.1-201ENST00000438726 172 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 CALM1P2-201ENST00000452941 448 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 SSXP1-201ENST00000453640 473 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.04□□□□□ -2.08
COL6A3P12111 AF186190.1-201ENST00000517470 480 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.04□□□□□ -2.08
COL6A3P12111 OR4A45P-201ENST00000529954 901 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 OR4G1P-203ENST00000641984 1631 ntBASIC2.04□□□□□ -2.08
COL6A3P12111 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL6A3P12111 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
COL6A3P12111 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.03□□□□□ -2.08
COL6A3P12111 MIR3074-201ENST00000384885 81 ntBASIC2.03□□□□□ -2.08
COL6A3P12111 CACYBPP1-201ENST00000438592 684 ntBASIC2.03□□□□□ -2.08
COL6A3P12111 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
COL6A3P12111 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL6A3P12111 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
COL6A3P12111 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
COL6A3P12111 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL6A3P12111 ZNF542P-204ENST00000482727 1305 ntBASIC2.03□□□□□ -2.08
COL6A3P12111 MTCO3P31-201ENST00000405526 789 ntBASIC2.03□□□□□ -2.08
COL6A3P12111 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.03□□□□□ -2.08
COL6A3P12111 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.03□□□□□ -2.08
COL6A3P12111 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.03□□□□□ -2.09
COL6A3P12111 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL6A3P12111 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 PROS2P-201ENST00000474651 1951 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.02□□□□□ -2.09
COL6A3P12111 RNU6-37P-201ENST00000362692 107 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 RNU6-11P-201ENST00000364234 107 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 IPMKP1-201ENST00000425988 855 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC2.02□□□□□ -2.09
COL6A3P12111 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC2.02□□□□□ -2.09
COL6A3P12111 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.02□□□□□ -2.09
COL6A3P12111 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 RN7SL793P-201ENST00000583259 296 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 RPL23AP61-201ENST00000623642 466 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 FRG1DP-201ENST00000635586 771 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AL353746.1-201ENST00000566293 6881 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
COL6A3P12111 RNU6-516P-201ENST00000411381 104 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 RPL36AP6-201ENST00000435770 321 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AC068305.1-201ENST00000497406 726 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.02□□□□□ -2.09
COL6A3P12111 AC002487.1-201ENST00000604565 994 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL6A3P12111 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 SNORA25.15-201ENST00000516487 89 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.02□□□□□ -2.09
COL6A3P12111 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.02□□□□□ -2.09
COL6A3P12111 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.02□□□□□ -2.09
COL6A3P12111 AC084768.2-201ENST00000622736 221 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 AC099654.11-201ENST00000638857 294 ntBASIC2.02□□□□□ -2.09
COL6A3P12111 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL6A3P12111 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
COL6A3P12111 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC2.01□□□□□ -2.09
COL6A3P12111 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.01□□□□□ -2.09
COL6A3P12111 GLYCAM1-201ENST00000546596 285 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 MIR151B-201ENST00000584249 96 ntBASIC2.01□□□□□ -2.09
COL6A3P12111 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.01□□□□□ -2.09
COL6A3P12111 uc_338.5-201ENST00000611839 155 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms