Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU7-143P-201ENST00000516781 65 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 IGKV2-38-201ENST00000517443 247 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.87□□□□□ -1.63
HMGB1P09429 AP000857.1-201ENST00000532151 543 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC011602.1-201ENST00000546484 331 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 HIGD1AP1-201ENST00000550979 275 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.87□□□□□ -1.63
HMGB1P09429 AL133153.1-201ENST00000557756 303 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC034229.4-201ENST00000607861 441 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AL161629.2-201ENST00000615347 275 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC091965.5-201ENST00000624785 342 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HMGB1P09429 MAPK10-322ENST00000641485 4530 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 CCT4P2-201ENST00000233836 1548 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 RNU6-799P-201ENST00000363567 107 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 SNORD74.4-201ENST00000364129 80 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 RPL21P17-201ENST00000397467 475 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC025750.1-201ENST00000399891 379 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 RPL21P24-201ENST00000413752 448 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.86□□□□□ -1.63
HMGB1P09429 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.86□□□□□ -1.63
HMGB1P09429 MTCO3P45-201ENST00000443036 613 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 ELOCP30-201ENST00000447108 299 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 AC006463.2-201ENST00000473326 348 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC021678.1-201ENST00000505195 936 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.86□□□□□ -1.63
HMGB1P09429 AC112673.1-201ENST00000513168 575 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 RNU6-678P-201ENST00000516832 109 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 RNA5SP291-201ENST00000517222 105 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC4.86□□□□□ -1.63
HMGB1P09429 MTCO1P49-201ENST00000523429 802 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AP003730.1-201ENST00000524605 285 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 HMGB1P14-201ENST00000557424 591 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.86□□□□□ -1.63
HMGB1P09429 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.86□□□□□ -1.63
HMGB1P09429 MIR4700-201ENST00000578311 74 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AC004696.1-201ENST00000614345 607 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 MIR7151-201ENST00000617477 60 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 AP000676.4-201ENST00000624659 623 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.86□□□□□ -1.63
HMGB1P09429 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.86□□□□□ -1.63
HMGB1P09429 AC007671.2-201ENST00000637344 619 ntBASIC4.86□□□□□ -1.63
HMGB1P09429 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HMGB1P09429 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HMGB1P09429 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HMGB1P09429 RNU6-198P-201ENST00000384258 104 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 MIR19A-201ENST00000384878 82 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 Z85995.1-201ENST00000415547 335 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 RPL23AP38-201ENST00000423801 469 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AL353748.1-201ENST00000440753 474 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AL606662.1-201ENST00000445763 553 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC093392.2-201ENST00000450682 337 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 MTND4LP3-201ENST00000468320 276 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 KC877373.1-201ENST00000479066 408 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC105137.1-201ENST00000484355 562 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 VN1R105P-201ENST00000486595 910 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC068724.1-201ENST00000487100 792 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 RN7SL604P-201ENST00000492589 296 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.85□□□□□ -1.63
HMGB1P09429 NRON-201ENST00000517270 370 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 RAB9BP1-201ENST00000519581 626 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.85□□□□□ -1.63
HMGB1P09429 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.85□□□□□ -1.63
HMGB1P09429 HMGB1P6-201ENST00000569046 646 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 MIR3138-201ENST00000585238 82 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC114878.2-201ENST00000604863 1251 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC012150.2-201ENST00000621300 544 ntBASIC4.85□□□□□ -1.63
HMGB1P09429 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.85□□□□□ -1.63
HMGB1P09429 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.85□□□□□ -1.63
HMGB1P09429 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.85□□□□□ -1.63
HMGB1P09429 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGB1P09429 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms