Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
LMX1BO60663 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LMX1BO60663 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.5□□□□□ -1.85
LMX1BO60663 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
LMX1BO60663 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LMX1BO60663 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
LMX1BO60663 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 RNU6-809P-201ENST00000384461 107 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 MIR1305-201ENST00000408300 86 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 USP9YP6-201ENST00000413550 854 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 GLRXP1-201ENST00000423261 334 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 MTCO2P19-201ENST00000427513 598 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 RPL7P36-201ENST00000444633 681 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 USP9YP34-201ENST00000453983 808 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 OR6K1P-201ENST00000456766 971 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC013267.1-201ENST00000458227 267 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 RPL7L1P8-201ENST00000469911 741 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC006511.1-201ENST00000470614 315 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 ACTR3P3-201ENST00000480448 893 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 HMGB1P36-201ENST00000487709 576 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 AC022447.3-201ENST00000506865 495 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC108078.1-201ENST00000508073 725 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 VWA8P1-201ENST00000510889 176 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 FTH1P21-201ENST00000512179 511 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC026726.1-201ENST00000512859 601 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 RNU6-314P-201ENST00000516574 104 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 OR5AP1P-201ENST00000529730 940 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 HNRNPCP4-201ENST00000571636 900 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC025627.2-201ENST00000576220 160 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 MIR5685-201ENST00000579080 79 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 MIR548S-201ENST00000581352 82 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LMX1BO60663 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 VN1R79P-201ENST00000593540 513 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 BNIP3P11-201ENST00000603878 563 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 AC004067.1-201ENST00000608733 700 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC090970.3-201ENST00000612566 866 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 MIR4727-201ENST00000622232 55 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 CR392039.5-201ENST00000623201 510 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 MIR6715B-201ENST00000637172 77 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 AL022578.1-201ENST00000439330 1433 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.49□□□□□ -1.85
LMX1BO60663 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.49□□□□□ -1.85
LMX1BO60663 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
LMX1BO60663 CR848007.1-201ENST00000442354 1699 ntBASIC3.49□□□□□ -1.85
LMX1BO60663 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 LINC02471-203ENST00000641941 4752 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.48□□□□□ -1.85
LMX1BO60663 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
LMX1BO60663 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
LMX1BO60663 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
LMX1BO60663 SNORA51.6-201ENST00000384151 125 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 SNORD115.1-201ENST00000391109 76 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RNU11-4P-201ENST00000391149 133 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 SNORD115-47-201ENST00000391226 86 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC016769.3-201ENST00000396562 315 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 EIF5P1-201ENST00000400019 1231 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AL590704.1-201ENST00000402856 794 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 RPL23AP48-201ENST00000406913 488 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC245052.5-201ENST00000416320 649 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC007742.1-201ENST00000425789 329 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.48□□□□□ -1.85
LMX1BO60663 AC018644.1-201ENST00000429934 551 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.48□□□□□ -1.85
LMX1BO60663 ELOCP26-201ENST00000436067 329 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LMX1BO60663 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.48□□□□□ -1.85
LMX1BO60663 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.48□□□□□ -1.85
LMX1BO60663 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.48□□□□□ -1.85
LMX1BO60663 MTCO1P42-201ENST00000457379 726 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms