Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL162431.4-201ENST00000604674 411 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AL592436.1-201ENST00000605135 558 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AL162730.1-201ENST00000605734 292 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 TUG1_2.1-201ENST00000614234 87 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AC134503.1-201ENST00000633048 54 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AC055839.1-201ENST00000634467 498 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 SAMMSON-213ENST00000641336 1521 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AL450326.2-201ENST00000421913 1962 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HOXA3O43365 ZNF33CP-201ENST00000432492 2030 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 IRF5P1-201ENST00000504852 2164 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 RN7SKP95-201ENST00000362860 303 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RN7SKP153-201ENST00000365026 316 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 SNORA56-201ENST00000383966 129 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RNU6-43P-201ENST00000384302 107 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 SNORA66-201ENST00000384792 133 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXA3O43365 AC013442.1-201ENST00000397347 228 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 GLULP6-201ENST00000399502 913 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RPS4XP9-201ENST00000405151 780 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 OR2AM1P-201ENST00000422137 422 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RAC1P6-201ENST00000423911 575 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.13□□□□□ -1.75
HOXA3O43365 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 KCTD9P3-201ENST00000434597 1169 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 NDUFB4P8-201ENST00000435351 367 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 GTF2IP13-201ENST00000438487 386 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 AC020550.1-201ENST00000447385 163 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 RNU7-66P-201ENST00000459469 62 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RPL7P23-201ENST00000493874 747 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 Y_RNA.654-201ENST00000497848 106 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC140172.1-201ENST00000502928 141 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 COX6B1P5-201ENST00000509843 249 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC108078.2-201ENST00000510750 236 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 BTF3P13-201ENST00000513224 490 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC006427.1-201ENST00000514359 712 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RNU6-559P-201ENST00000516151 98 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RNU6-327P-201ENST00000516270 127 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 RNU6-1045P-201ENST00000516321 107 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 Y_RNA.682-201ENST00000516457 100 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 SNORA25.17-201ENST00000517184 124 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXA3O43365 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.13□□□□□ -1.75
HOXA3O43365 MIR3942-201ENST00000585264 109 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC108738.1-201ENST00000603703 237 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AL360085.1-201ENST00000604713 532 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 Z82243.1-201ENST00000609432 473 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AL627230.1-201ENST00000613077 211 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXA3O43365 AL591926.8-201ENST00000616876 211 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 SNHG22-203ENST00000617833 660 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AC087385.3-201ENST00000620477 187 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 AL357559.1-201ENST00000622228 274 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 MTND4LP32-201ENST00000636111 270 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXA3O43365 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXA3O43365 LINC01355-201ENST00000566551 5444 ntBASIC4.13□□□□□ -1.75
HOXA3O43365 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXA3O43365 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXA3O43365 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
HOXA3O43365 AC104260.2-201ENST00000623551 3497 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXA3O43365 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA3O43365 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA3O43365 AC090971.4-201ENST00000560291 1800 ntBASIC4.12□□□□□ -1.75
HOXA3O43365 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA3O43365 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA3O43365 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms