Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-1197P-201ENST00000391183 107 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 PIGPP2-201ENST00000411569 458 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RPS24P7-201ENST00000416921 246 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 PPP1R11P2-201ENST00000423543 382 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC092573.2-201ENST00000434546 243 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL117351.1-201ENST00000438864 766 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC108734.1-201ENST00000439549 399 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 MTCO1P27-201ENST00000448269 226 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 MTCO3P16-201ENST00000454456 754 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RPS3AP6-201ENST00000484430 795 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RPS3AP50-201ENST00000487064 803 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 FTH1P21-201ENST00000512179 511 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 GMPSP1-201ENST00000514075 579 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SNORA31.1-201ENST00000515993 133 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SNORA31.5-201ENST00000516190 133 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SNORD59.2-201ENST00000516873 68 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SNORA31.22-201ENST00000517204 135 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 OR8R1P-201ENST00000543943 764 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL354943.1-201ENST00000572103 781 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 MIR4286-201ENST00000580651 93 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 ZNF415P1-201ENST00000582279 1166 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC020914.6-201ENST00000594327 272 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL357094.1-201ENST00000603845 844 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL137849.1-201ENST00000604767 169 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC025588.2-201ENST00000604851 466 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC105148.1-201ENST00000604961 409 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL731566.2-201ENST00000618971 317 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL607023.1-201ENST00000620045 248 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AL356596.1-201ENST00000624230 379 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC068724.3-201ENST00000625906 87 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 MIR372-201ENST00000362225 67 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RNU5E-8P-201ENST00000363502 116 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RNU6-253P-201ENST00000384730 105 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 U3.20-201ENST00000390909 217 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RNU6-516P-201ENST00000411381 104 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 TPMTP3-201ENST00000411928 735 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RPL22P18-201ENST00000417197 377 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 OR8F1P-201ENST00000425243 930 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL590383.1-201ENST00000428602 75 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL365396.1-201ENST00000430854 671 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 SKP1P1-201ENST00000438081 489 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 LSM1P1-201ENST00000438629 273 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RPL7L1P8-201ENST00000469911 741 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC010460.1-201ENST00000507087 466 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 RN7SKP83-201ENST00000516512 178 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC093227.2-201ENST00000589357 285 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXA2Q9Y261 AC234772.3-201ENST00000602277 528 ntBASIC3.09□□□□□ -1.91
FOXA2Q9Y261 SNORA51-201ENST00000606420 132 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms