Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC098824.1-201ENST00000453565 980 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 HMGB1P15-201ENST00000453854 435 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC092754.2-201ENST00000463506 460 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 FAM133DP-201ENST00000464802 691 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 RN7SL132P-201ENST00000478131 296 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC109486.1-201ENST00000486833 374 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AP001086.1-201ENST00000494882 321 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC080014.1-201ENST00000496877 1201 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 DSTNP2-201ENST00000504533 515 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC010460.1-201ENST00000507087 466 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC006390.1-201ENST00000508068 283 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC010625.1-201ENST00000511296 403 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC024589.1-201ENST00000512207 263 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC023632.4-201ENST00000517783 191 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AP004247.1-201ENST00000531556 1289 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC008011.1-201ENST00000545989 227 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 EEF1B2P4-201ENST00000551398 348 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AP001004.1-201ENST00000582468 324 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC244505.7-201ENST00000599675 272 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL022161.1-201ENST00000604390 213 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL049634.3-201ENST00000604968 457 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL109618.2-201ENST00000605527 211 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 MIR7844-201ENST00000616161 122 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 MIR6500-201ENST00000622700 86 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 RNU4-21P-201ENST00000362802 126 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 Y_RNA.97-201ENST00000363094 102 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 RNU6-1249P-201ENST00000363237 111 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 SNORD51-201ENST00000384320 80 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 RN7SKP27-201ENST00000410684 333 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC244098.2-201ENST00000422068 99 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL512649.1-201ENST00000428997 581 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC091862.1-201ENST00000438016 1100 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 SKP1P1-201ENST00000438081 489 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 MTND1P30-201ENST00000441241 901 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL831737.1-201ENST00000441288 271 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AP000936.2-201ENST00000447151 681 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 HMGN2P21-201ENST00000447764 270 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 PAXBP1P1-201ENST00000449315 447 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 RPL7L1P8-201ENST00000469911 741 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC007537.2-201ENST00000472093 511 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 POU5F1P7-201ENST00000508759 541 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 OR5BM1P-201ENST00000512021 366 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 RNA5SP216-201ENST00000516111 123 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC126177.3-201ENST00000551839 688 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC012414.6-201ENST00000568241 401 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-1Q99801 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC015726.1-201ENST00000602353 681 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC007687.1-201ENST00000602704 304 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 XIAPP1-201ENST00000603162 600 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL355812.1-201ENST00000603215 216 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AP001981.2-201ENST00000603241 418 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AP000403.1-201ENST00000603349 851 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 IGHV3-29-201ENST00000604817 344 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC004853.1-201ENST00000604902 698 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC245008.1-201ENST00000608123 476 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC012531.5-201ENST00000611375 151 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC073114.1-201ENST00000612027 490 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AC008121.2-201ENST00000614647 523 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.27□□□□□ -1.89
NKX3-1Q99801 AL596245.1-201ENST00000618994 362 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms