Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC006116.7-201ENST00000590141 756 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC009220.3-201ENST00000604318 586 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC073387.2-201ENST00000604797 784 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC069545.1-201ENST00000605671 358 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC009570.1-201ENST00000609599 745 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC068647.1-201ENST00000489539 2265 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 RNU6-882P-201ENST00000391025 103 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 SNORA48.8-201ENST00000391324 134 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AL136372.1-201ENST00000403060 228 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 MIR1289-1-201ENST00000408836 144 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 SSXP9-201ENST00000417503 292 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC007435.1-201ENST00000421086 415 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 RPL21P40-201ENST00000428586 483 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 MTND2P5-201ENST00000432656 1006 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 GTF2IP7-202ENST00000436677 309 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 RAC1P7-201ENST00000445367 377 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 RPS29P31-201ENST00000446147 164 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 RPL30P14-201ENST00000482744 348 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC004024.1-201ENST00000549244 247 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 OR4T1P-201ENST00000554933 911 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 MIR3912-201ENST00000577566 105 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AL162713.1-201ENST00000604480 262 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC112220.2-201ENST00000605513 533 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AP002826.1-201ENST00000608835 315 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 MIR6076-201ENST00000617521 113 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC127502.3-201ENST00000636170 1206 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 CRYM-AS1-204ENST00000637983 556 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 AC090740.1-201ENST00000623193 2262 ntBASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HDDC3Q8N4P3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
HDDC3Q8N4P3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HDDC3Q8N4P3 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
HDDC3Q8N4P3 SNRPEP3-201ENST00000338402 276 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 RNU6-216P-201ENST00000363282 104 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 RNA5SP197-201ENST00000363357 119 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 RNU6-283P-201ENST00000364788 107 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 RPS4XP3-201ENST00000398541 413 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 VN1R51P-201ENST00000411675 945 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 TMEM167AP1-201ENST00000423409 219 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 USP9YP36-201ENST00000424581 829 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 OR6K5P-201ENST00000447050 945 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC005297.2-201ENST00000450430 606 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 APOOP4-201ENST00000513530 597 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 RNU6-1231P-201ENST00000517185 103 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC104986.1-201ENST00000517978 436 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC055876.1-202ENST00000567053 138 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 MIR5004-201ENST00000579078 107 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 MIR4637-201ENST00000582405 84 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC067852.3-201ENST00000589177 561 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 BNIP3P38-201ENST00000601117 544 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC106791.2-201ENST00000604680 391 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 TUG1_1.1-201ENST00000610654 145 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 DUXAP10-204ENST00000612052 616 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC084824.4-201ENST00000620106 731 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AC004009.2-201ENST00000623016 728 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 MIR1322-201ENST00000638013 71 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 CDR1-202ENST00000625883 1485 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 AL513185.3-201ENST00000433335 1300 ntBASIC3.4□□□□□ -1.87
HDDC3Q8N4P3 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HDDC3Q8N4P3 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms