Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.62□□□□□ -1.51
USP48Q86UV5 AL121757.2-201ENST00000611223 313 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 AC006329.2-201ENST00000611491 394 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 AL023881.1-201ENST00000621088 301 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 AC002550.2-201ENST00000621246 394 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 MIR3662-201ENST00000637030 95 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 MTND4P12-201ENST00000498999 1377 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP48Q86UV5 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP48Q86UV5 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.61□□□□□ -1.51
USP48Q86UV5 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP48Q86UV5 RNU1-94P-201ENST00000362627 173 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 RNU5A-8P-201ENST00000364102 114 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
USP48Q86UV5 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 RPS4XP8-201ENST00000402039 771 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC006946.1-201ENST00000429106 328 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP48Q86UV5 FTH1P1-201ENST00000437933 532 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 PTMAP3-201ENST00000447474 330 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC022364.2-201ENST00000457963 554 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 RNU6-420P-201ENST00000458780 107 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AC053481.1-201ENST00000467217 306 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 RPS29P25-201ENST00000481709 171 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AC006130.2-201ENST00000586202 326 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 IPO5P1-202ENST00000600039 287 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP48Q86UV5 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.61□□□□□ -1.51
USP48Q86UV5 AL136363.1-201ENST00000605349 337 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AC091979.2-201ENST00000607514 214 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AL356585.4-201ENST00000623078 1229 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AC040168.1-201ENST00000623594 991 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AL359922.3-201ENST00000624779 1670 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 AC006065.6-201ENST00000625201 545 ntBASIC5.61□□□□□ -1.51
USP48Q86UV5 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 FER-210ENST00000628534 558 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.61□□□□□ -1.51
USP48Q86UV5 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
USP48Q86UV5 ZNF137P-201ENST00000456718 1920 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP48Q86UV5 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 NMD3P1-201ENST00000439704 1488 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP48Q86UV5 BTBD10P1-201ENST00000549824 1352 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
USP48Q86UV5 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
USP48Q86UV5 Y_RNA.548-201ENST00000384656 105 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 RPS26P8-201ENST00000393490 348 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 MRPL50P2-201ENST00000416821 482 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.6□□□□□ -1.51
USP48Q86UV5 RWDD4P2-201ENST00000426392 563 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 RAC1P7-201ENST00000445367 377 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC079168.2-201ENST00000453977 416 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC108059.3-201ENST00000456388 214 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 MTND1P11-201ENST00000456661 876 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 snoU13.22-201ENST00000459428 104 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC105137.1-201ENST00000484355 562 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AC025465.4-201ENST00000513422 638 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AC090572.1-201ENST00000519251 160 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.6□□□□□ -1.51
USP48Q86UV5 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
USP48Q86UV5 OR4P1P-201ENST00000530808 1136 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AC105129.1-201ENST00000560250 297 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AC093249.4-201ENST00000564755 259 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 COX6CP3-201ENST00000580869 223 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.6□□□□□ -1.51
USP48Q86UV5 AC005086.4-201ENST00000623065 213 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 AP003122.6-201ENST00000623831 495 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 U3.53-201ENST00000628922 216 ntBASIC5.6□□□□□ -1.51
USP48Q86UV5 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP48Q86UV5 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms