Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC012531.5-201ENST00000611375 151 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 AC092650.2-201ENST00000619984 902 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.73□□□□□ -1.97
USP54Q70EL1 AL512643.1-201ENST00000635735 524 ntBASIC2.73□□□□□ -1.97
USP54Q70EL1 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP54Q70EL1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP54Q70EL1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP54Q70EL1 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.72□□□□□ -1.97
USP54Q70EL1 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.72□□□□□ -1.97
USP54Q70EL1 RPL7P54-201ENST00000438336 674 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 AC003989.2-201ENST00000440224 169 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.72□□□□□ -1.97
USP54Q70EL1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.72□□□□□ -1.97
USP54Q70EL1 SMARCE1P4-201ENST00000523647 241 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 AP000889.2-201ENST00000532684 490 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 AC087241.2-201ENST00000535801 324 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.72□□□□□ -1.97
USP54Q70EL1 AC005951.1-201ENST00000576706 485 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 MIR4781-201ENST00000585250 76 ntBASIC2.72□□□□□ -1.97
USP54Q70EL1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
USP54Q70EL1 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
USP54Q70EL1 MIR124-3-201ENST00000384866 87 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC098592.2-201ENST00000413158 265 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC073464.3-201ENST00000422564 712 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC073310.1-201ENST00000423226 1033 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 UBE2V2P4-201ENST00000447495 259 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC089999.1-201ENST00000460336 374 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC012170.1-201ENST00000495139 359 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 RPL38P4-201ENST00000502376 214 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.71□□□□□ -1.98
USP54Q70EL1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.71□□□□□ -1.98
USP54Q70EL1 AC110588.1-201ENST00000559699 137 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
USP54Q70EL1 MIR4716-201ENST00000579628 84 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC128687.1-201ENST00000605304 619 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 AC093673.2-201ENST00000609674 331 ntBASIC2.71□□□□□ -1.98
USP54Q70EL1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.71□□□□□ -1.98
USP54Q70EL1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.71□□□□□ -1.98
USP54Q70EL1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.7□□□□□ -1.98
USP54Q70EL1 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.7□□□□□ -1.98
USP54Q70EL1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
USP54Q70EL1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.7□□□□□ -1.98
USP54Q70EL1 CR769767.1-201ENST00000436337 346 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.7□□□□□ -1.98
USP54Q70EL1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.7□□□□□ -1.98
USP54Q70EL1 AL353093.1-201ENST00000441292 436 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 RPS29P11-201ENST00000496507 171 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
USP54Q70EL1 RNU6-347P-201ENST00000516658 105 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.7□□□□□ -1.98
USP54Q70EL1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.7□□□□□ -1.98
USP54Q70EL1 AC084757.1-201ENST00000559987 490 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 AC091834.1-201ENST00000614543 472 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 AC048347.1-201ENST00000624621 427 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 AL353746.1-201ENST00000566293 6881 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 AP001486.2-201ENST00000561652 5113 ntBASIC2.7□□□□□ -1.98
USP54Q70EL1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
USP54Q70EL1 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
USP54Q70EL1 Y_RNA.796-201ENST00000364268 102 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 Y_RNA.799-201ENST00000364992 102 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC2.69□□□□□ -1.98
USP54Q70EL1 TRGV6-201ENST00000417928 299 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.69□□□□□ -1.98
USP54Q70EL1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.69□□□□□ -1.98
USP54Q70EL1 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.69□□□□□ -1.98
USP54Q70EL1 RPL21P2-201ENST00000440049 481 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.69□□□□□ -1.98
USP54Q70EL1 RPL7P5-201ENST00000471472 736 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 TBCAP3-201ENST00000512475 312 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.69□□□□□ -1.98
USP54Q70EL1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.69□□□□□ -1.98
USP54Q70EL1 TRAV11-201ENST00000539512 339 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC068714.1-201ENST00000559623 800 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.69□□□□□ -1.98
USP54Q70EL1 AC006378.2-201ENST00000623178 2476 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AP001148.1-201ENST00000624124 2359 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
USP54Q70EL1 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
USP54Q70EL1 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 U3.37-201ENST00000408528 213 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 MTCO3P21-201ENST00000430791 643 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.69□□□□□ -1.98
USP54Q70EL1 RNA5SP402-201ENST00000517148 110 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.69□□□□□ -1.98
USP54Q70EL1 LRRC37A5P-203ENST00000580181 585 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.69□□□□□ -1.98
USP54Q70EL1 ABI1P1-201ENST00000603375 1120 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AC009570.1-201ENST00000609599 745 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 AL359198.2-201ENST00000611836 194 ntBASIC2.69□□□□□ -1.98
USP54Q70EL1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
USP54Q70EL1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USP54Q70EL1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
USP54Q70EL1 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.68□□□□□ -1.98
USP54Q70EL1 AC048351.1-201ENST00000420064 602 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 AL358453.1-201ENST00000422522 250 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 RAB9AP5-201ENST00000437794 597 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 RAB9AP2-201ENST00000443911 597 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 RPL34P26-201ENST00000445636 354 ntBASIC2.68□□□□□ -1.98
USP54Q70EL1 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms