Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 AC093591.3-201ENST00000634516 308 ntBASIC1.75□□□□□ -2.13
USF3Q68DE3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
USF3Q68DE3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
USF3Q68DE3 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC1.74□□□□□ -2.13
USF3Q68DE3 AC012321.1-201ENST00000561622 1588 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-1320P-201ENST00000390838 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-1269P-201ENST00000391139 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
USF3Q68DE3 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.74□□□□□ -2.13
USF3Q68DE3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.74□□□□□ -2.13
USF3Q68DE3 SNRPFP2-201ENST00000440710 251 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 PTGES3P5-201ENST00000455109 434 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-599P-201ENST00000459383 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-1193P-201ENST00000459461 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AC117522.2-201ENST00000510049 657 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 SNORD116-26-201ENST00000516006 96 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.74□□□□□ -2.13
USF3Q68DE3 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.74□□□□□ -2.13
USF3Q68DE3 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-368P-201ENST00000620928 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RNU6-538P-201ENST00000622329 107 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.74□□□□□ -2.13
USF3Q68DE3 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
USF3Q68DE3 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
USF3Q68DE3 MIR378A-201ENST00000362177 66 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RN7SKP226-201ENST00000364912 300 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RPL5P19-201ENST00000404228 893 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 SEC63P1-201ENST00000425785 1258 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.74□□□□□ -2.13
USF3Q68DE3 IFNWP4-201ENST00000453148 294 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 RPL36AP21-201ENST00000490372 323 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.74□□□□□ -2.13
USF3Q68DE3 AC012182.1-201ENST00000570133 895 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AL121917.1-203ENST00000605534 577 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 AC093673.2-201ENST00000609674 331 ntBASIC1.74□□□□□ -2.13
USF3Q68DE3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
USF3Q68DE3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USF3Q68DE3 Z82209.1-201ENST00000422141 2135 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 RNU6-321P-201ENST00000410912 106 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.73□□□□□ -2.13
USF3Q68DE3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.73□□□□□ -2.13
USF3Q68DE3 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.73□□□□□ -2.13
USF3Q68DE3 MTCYBP14-201ENST00000457471 715 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 HMGN1P28-201ENST00000521340 364 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.73□□□□□ -2.13
USF3Q68DE3 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USF3Q68DE3 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.73□□□□□ -2.13
USF3Q68DE3 AMZ2P1-203ENST00000565833 850 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 AL159169.2-201ENST00000610061 1269 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 MTND5P28-201ENST00000438005 1594 ntBASIC1.73□□□□□ -2.13
USF3Q68DE3 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC1.73□□□□□ -2.13
USF3Q68DE3 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USF3Q68DE3 SNORA25.9-201ENST00000365087 128 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 RNA5SP338-201ENST00000410495 85 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 DPPA2P1-201ENST00000428060 556 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AL353597.2-202ENST00000434901 373 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AL591719.1-201ENST00000444669 744 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AC109486.1-201ENST00000486833 374 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AC023424.2-201ENST00000493479 777 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.72□□□□□ -2.13
USF3Q68DE3 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC1.72□□□□□ -2.13
USF3Q68DE3 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AL139811.1-201ENST00000424779 2299 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AC092435.3-201ENST00000565538 3654 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
USF3Q68DE3 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
USF3Q68DE3 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.72□□□□□ -2.13
USF3Q68DE3 Y_RNA.40-201ENST00000362645 93 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 MIR489-201ENST00000384923 84 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 RPL23AP39-201ENST00000415533 405 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AC124916.1-201ENST00000444020 547 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 OR52A4P-203ENST00000498233 1014 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 HMGB3P15-201ENST00000507326 574 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC1.72□□□□□ -2.13
USF3Q68DE3 TRAV11-201ENST00000539512 339 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC1.72□□□□□ -2.13
USF3Q68DE3 AC120053.1-201ENST00000607706 736 ntBASIC1.72□□□□□ -2.13
USF3Q68DE3 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
USF3Q68DE3 Y_RNA.796-201ENST00000364268 102 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 Y_RNA.269-201ENST00000364685 89 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 Y_RNA.799-201ENST00000364992 102 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC240504.1-201ENST00000395709 845 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AC023128.2-201ENST00000420880 1223 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.71□□□□□ -2.14
USF3Q68DE3 SCARNA17.1-201ENST00000516211 143 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 SCARNA17.2-201ENST00000516334 143 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC1.71□□□□□ -2.14
USF3Q68DE3 OR4K7P-201ENST00000580232 945 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms