Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL024509.2-201ENST00000493462 493 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC010625.1-201ENST00000511296 403 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AF131216.2-201ENST00000512316 564 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 HSPA8P13-201ENST00000523715 472 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AL356057.1-201ENST00000533798 831 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 HSPE1P5-201ENST00000561489 272 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AL360157.1-201ENST00000565962 87 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 MIR5685-201ENST00000579080 79 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 MIR5195-201ENST00000583555 115 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 KC877982.1-201ENST00000602313 470 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 U73023.1-201ENST00000603134 700 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 RNU4-89P-201ENST00000607443 133 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC106028.5-201ENST00000610332 395 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC073114.1-201ENST00000612027 490 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC026422.1-201ENST00000623961 452 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC008013.2-202ENST00000637965 364 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 PABPC1P9-201ENST00000426076 1612 ntBASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PDLIM3Q53GG5 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 RNU6-629P-201ENST00000384061 103 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 RPL21P65-201ENST00000406094 466 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 RNU2-47P-201ENST00000410649 186 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 SNRPFP1-201ENST00000414761 252 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 MTCO2P5-201ENST00000422621 426 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AL157831.1-201ENST00000426134 473 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 UBE2FP3-201ENST00000436366 524 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 SDCBPP1-201ENST00000440192 890 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 MTND2P4-201ENST00000445034 1004 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC010468.1-201ENST00000461022 817 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AL049830.2-201ENST00000480072 201 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 OR2A20P-203ENST00000498397 1268 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC112198.1-201ENST00000505369 1220 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC093853.1-201ENST00000515689 483 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC087276.1-201ENST00000529659 480 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC126177.3-201ENST00000551839 688 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC113403.1-201ENST00000604910 193 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC128687.2-201ENST00000609657 566 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AL442067.2-201ENST00000614033 363 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 MIR8058-201ENST00000615737 89 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 ZNF833P-201ENST00000424938 1494 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 AC004925.1-201ENST00000624256 2706 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms