Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC004866.2-201ENST00000438285 481 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 snoU13.18-201ENST00000459483 104 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR3670-2-201ENST00000582974 65 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR3670-1-201ENST00000584160 65 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR3670-3-201ENST00000584855 65 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR4781-201ENST00000585250 76 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR3670-4-201ENST00000612260 65 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC005156.1-201ENST00000613371 573 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC010297.1-201ENST00000623948 149 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 ZNF33CP-201ENST00000432492 2030 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC005539.1-201ENST00000443768 1479 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 SNORD65-201ENST00000391079 73 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC240504.1-201ENST00000395709 845 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MTND2P8-201ENST00000450555 1025 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC233279.1-201ENST00000455300 423 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC004263.1-201ENST00000479327 332 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MIR5007-201ENST00000583098 95 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AP004372.1-201ENST00000604842 844 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC067747.1-201ENST00000608026 250 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 AC009831.4-201ENST00000620744 325 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 MTND5P7-201ENST00000413558 1798 ntBASIC2.73□□□□□ -1.97
CCDC88AQ3V6T2 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 MTND5P29-201ENST00000458676 1807 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 Y_RNA.338-201ENST00000365320 114 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 RPL31P52-201ENST00000407532 367 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 AC026412.2-201ENST00000512270 1075 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 RNA5SP445-201ENST00000515889 115 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 MIR548Y-201ENST00000582739 110 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 AC011468.4-201ENST00000603942 409 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 RNA5SP108-201ENST00000605921 117 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 VN1R7P-201ENST00000619242 903 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 AC011460.1-201ENST00000636268 1834 ntBASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC88AQ3V6T2 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 SNORD21-201ENST00000383953 95 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 SNORA40.18-201ENST00000391200 128 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 SNORA26.7-201ENST00000391288 122 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AL354719.1-201ENST00000406535 843 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 MTCO1P30-201ENST00000515244 580 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 RNU6-295P-201ENST00000516901 104 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AP003467.2-201ENST00000520175 319 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 OR4R2P-201ENST00000530815 597 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AC004486.1-201ENST00000546846 233 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 ZNF192P1-203ENST00000565888 810 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AC025281.1-201ENST00000567026 265 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 MAGOH2P-202ENST00000584384 429 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AP001486.2-201ENST00000561652 5113 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 MIR21-201ENST00000362134 72 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 Y_RNA.40-201ENST00000362645 93 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 RNU2-37P-201ENST00000410695 177 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 CR769767.1-201ENST00000436337 346 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 FAM60CP-201ENST00000591086 664 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AL022099.1-201ENST00000604551 712 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AP003117.2-201ENST00000606010 545 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AC105429.2-201ENST00000610567 517 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 AP005901.5-201ENST00000545779 1796 ntBASIC2.71□□□□□ -1.98
CCDC88AQ3V6T2 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 RNU6-317P-201ENST00000384031 107 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 RNU6-356P-201ENST00000384140 107 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 RNU2-2P-201ENST00000410396 191 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 MTCO3P17-201ENST00000443775 513 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 MTND4LP24-201ENST00000572277 291 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 AC245517.5-201ENST00000611529 162 ntBASIC2.7□□□□□ -1.98
CCDC88AQ3V6T2 U2.15-201ENST00000611544 191 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms