Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC113139.1-201ENST00000605049 239 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC116312.1-201ENST00000606841 314 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC010149.2-201ENST00000637608 315 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RLIMP2-201ENST00000427891 1563 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A3Q01955 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.71
COL4A3Q01955 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AC027228.2-201ENST00000567141 2154 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
COL4A3Q01955 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A3Q01955 RNA5SP119-201ENST00000362715 117 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 Y_RNA.67-201ENST00000362870 100 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 SNORA69-201ENST00000383895 132 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RNU6-730P-201ENST00000383954 104 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RNU6-510P-201ENST00000391239 108 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RNU6-1068P-201ENST00000410958 103 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AL353729.1-201ENST00000425044 720 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A3Q01955 BNIP3P2-201ENST00000441221 577 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RPS15AP1-201ENST00000457423 391 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RNU6-261P-201ENST00000459506 102 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RPL7P22-201ENST00000466005 733 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AC026427.2-201ENST00000506228 536 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL4A3Q01955 RPL23AP94-201ENST00000512518 302 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 RN7SKP13-201ENST00000515933 244 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A3Q01955 DYNLL1P4-201ENST00000549314 266 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 AC055876.1-202ENST00000567053 138 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 AC012182.1-201ENST00000570133 895 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL4A3Q01955 AC138649.5-201ENST00000637456 137 ntBASIC4.34□□□□□ -1.71
COL4A3Q01955 NUP58P1-201ENST00000502546 1738 ntBASIC4.34□□□□□ -1.72
COL4A3Q01955 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
COL4A3Q01955 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL4A3Q01955 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.33□□□□□ -1.72
COL4A3Q01955 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL4A3Q01955 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL4A3Q01955 Y_RNA.46-201ENST00000362695 102 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 RNU1-39P-201ENST00000383897 165 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A3Q01955 AC091286.1-201ENST00000431233 461 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 AL606489.2-201ENST00000433886 234 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A3Q01955 CYCSP43-201ENST00000438233 310 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 FAM103A2P-201ENST00000444122 354 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A3Q01955 SNORA70.24-201ENST00000517233 118 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A3Q01955 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.33□□□□□ -1.72
COL4A3Q01955 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.33□□□□□ -1.72
COL4A3Q01955 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A3Q01955 PSMA3P-201ENST00000555485 635 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.33□□□□□ -1.72
COL4A3Q01955 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.33□□□□□ -1.72
COL4A3Q01955 AC008687.2-201ENST00000597865 520 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 AL360085.1-201ENST00000604713 532 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A3Q01955 OR10AB1P-201ENST00000609613 938 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
COL4A3Q01955 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 AC022031.1-201ENST00000585985 2593 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 MTND4P27-201ENST00000450813 1354 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 USP9YP4-201ENST00000424401 1745 ntBASIC4.33□□□□□ -1.72
COL4A3Q01955 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A3Q01955 OR5J1P-201ENST00000313544 939 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
COL4A3Q01955 U8.11-201ENST00000384699 133 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 U8.12-201ENST00000384701 133 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 RPL7P25-201ENST00000404151 721 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A3Q01955 AL353777.1-201ENST00000425552 326 ntBASIC4.32□□□□□ -1.72
COL4A3Q01955 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A3Q01955 USP9YP15-201ENST00000442391 422 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms