Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL23P2-201ENST00000320371 421 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RNU1-19P-201ENST00000363306 165 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RNU6-960P-201ENST00000364056 120 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RNU6-188P-201ENST00000364207 107 ntBASIC5.31□□□□□ -1.56
LIG3P49916 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG3P49916 RNU6-1297P-201ENST00000384415 104 ntBASIC5.31□□□□□ -1.56
LIG3P49916 MIR105-2-201ENST00000385083 81 ntBASIC5.31□□□□□ -1.56
LIG3P49916 SPTLC1P2-201ENST00000407089 121 ntBASIC5.31□□□□□ -1.56
LIG3P49916 BEND7P1-201ENST00000422058 457 ntBASIC5.31□□□□□ -1.56
LIG3P49916 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.31□□□□□ -1.56
LIG3P49916 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.31□□□□□ -1.56
LIG3P49916 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 RPL35AP21-201ENST00000437667 333 ntBASIC5.31□□□□□ -1.56
LIG3P49916 PRPS1P1-201ENST00000445305 876 ntBASIC5.31□□□□□ -1.56
LIG3P49916 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG3P49916 Y_RNA.635-201ENST00000459041 101 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RN7SL515P-201ENST00000463999 297 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RPL37P6-202ENST00000464216 403 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RPS18P6-201ENST00000476880 458 ntBASIC5.31□□□□□ -1.56
LIG3P49916 Y_RNA.654-201ENST00000497848 106 ntBASIC5.31□□□□□ -1.56
LIG3P49916 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 BTF3P13-201ENST00000513224 490 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RNU6-864P-201ENST00000516256 108 ntBASIC5.31□□□□□ -1.56
LIG3P49916 SNORA25.17-201ENST00000517184 124 ntBASIC5.31□□□□□ -1.56
LIG3P49916 AC105031.1-201ENST00000518550 476 ntBASIC5.31□□□□□ -1.56
LIG3P49916 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG3P49916 AC109635.4-202ENST00000531666 412 ntBASIC5.31□□□□□ -1.56
LIG3P49916 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 AL118558.2-201ENST00000556294 238 ntBASIC5.31□□□□□ -1.56
LIG3P49916 AC020661.2-201ENST00000560114 134 ntBASIC5.31□□□□□ -1.56
LIG3P49916 FRG2DP-202ENST00000566967 323 ntBASIC5.31□□□□□ -1.56
LIG3P49916 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 AC006254.3-201ENST00000603353 884 ntBASIC5.31□□□□□ -1.56
LIG3P49916 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG3P49916 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 AC018445.2-201ENST00000622987 260 ntBASIC5.31□□□□□ -1.56
LIG3P49916 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIG3P49916 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIG3P49916 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 EXOC5P1-201ENST00000510543 1969 ntBASIC5.31□□□□□ -1.56
LIG3P49916 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG3P49916 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
LIG3P49916 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 BTBD10P1-201ENST00000549824 1352 ntBASIC5.3□□□□□ -1.56
LIG3P49916 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG3P49916 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 RNU6-1287P-201ENST00000362914 107 ntBASIC5.3□□□□□ -1.56
LIG3P49916 RNU6-1284P-201ENST00000363701 100 ntBASIC5.3□□□□□ -1.56
LIG3P49916 Y_RNA.301-201ENST00000364990 103 ntBASIC5.3□□□□□ -1.56
LIG3P49916 SNORD115-7-201ENST00000365306 82 ntBASIC5.3□□□□□ -1.56
LIG3P49916 RNU6-61P-201ENST00000365528 109 ntBASIC5.3□□□□□ -1.56
LIG3P49916 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
LIG3P49916 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG3P49916 SNORA24.1-201ENST00000384401 135 ntBASIC5.3□□□□□ -1.56
LIG3P49916 RNU6-1060P-201ENST00000384664 107 ntBASIC5.3□□□□□ -1.56
LIG3P49916 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LIG3P49916 Y_RNA.579-201ENST00000390939 94 ntBASIC5.3□□□□□ -1.56
LIG3P49916 MIR548P-201ENST00000408336 84 ntBASIC5.3□□□□□ -1.56
LIG3P49916 RNU4-65P-201ENST00000410473 140 ntBASIC5.3□□□□□ -1.56
LIG3P49916 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG3P49916 AL391219.1-201ENST00000422570 483 ntBASIC5.3□□□□□ -1.56
LIG3P49916 ELOCP18-201ENST00000434209 337 ntBASIC5.3□□□□□ -1.56
LIG3P49916 RPS20P1-201ENST00000434853 354 ntBASIC5.3□□□□□ -1.56
LIG3P49916 GTF2IP13-201ENST00000438487 386 ntBASIC5.3□□□□□ -1.56
LIG3P49916 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG3P49916 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG3P49916 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 AC068587.1-201ENST00000483613 781 ntBASIC5.3□□□□□ -1.56
LIG3P49916 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG3P49916 RNU6-1038P-201ENST00000516516 104 ntBASIC5.3□□□□□ -1.56
LIG3P49916 AC103783.1-201ENST00000520506 373 ntBASIC5.3□□□□□ -1.56
LIG3P49916 AP001804.3-201ENST00000525146 880 ntBASIC5.3□□□□□ -1.56
LIG3P49916 AL137161.1-201ENST00000532231 390 ntBASIC5.3□□□□□ -1.56
LIG3P49916 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG3P49916 AC051619.2-201ENST00000559063 397 ntBASIC5.3□□□□□ -1.56
LIG3P49916 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.3□□□□□ -1.56
LIG3P49916 AC024619.4-201ENST00000580924 316 ntBASIC5.3□□□□□ -1.56
LIG3P49916 POLR3GP2-201ENST00000588366 668 ntBASIC5.3□□□□□ -1.56
LIG3P49916 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG3P49916 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG3P49916 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 AC108751.5-201ENST00000492880 1336 ntBASIC5.29□□□□□ -1.56
LIG3P49916 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIG3P49916 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 AL442639.1-201ENST00000625030 1899 ntBASIC5.29□□□□□ -1.56
LIG3P49916 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.29□□□□□ -1.56
LIG3P49916 API5P2-201ENST00000397055 1498 ntBASIC5.29□□□□□ -1.56
LIG3P49916 Y_RNA.128-201ENST00000363391 112 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms