Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC006548.1-201ENST00000427470 102 ntBASIC3.33□□□□□ -1.88
SOX3P41225 PSMA6P3-201ENST00000428242 164 ntBASIC3.33□□□□□ -1.88
SOX3P41225 YME1L1P1-201ENST00000429435 297 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 AL590103.1-201ENST00000434488 307 ntBASIC3.33□□□□□ -1.88
SOX3P41225 MTCYBP39-201ENST00000437562 491 ntBASIC3.33□□□□□ -1.88
SOX3P41225 MUPP-201ENST00000438111 566 ntBASIC3.33□□□□□ -1.88
SOX3P41225 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 HSPE1P28-201ENST00000443139 211 ntBASIC3.33□□□□□ -1.88
SOX3P41225 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 PDSS1P2-201ENST00000449397 678 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC005297.2-201ENST00000450430 606 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.33□□□□□ -1.88
SOX3P41225 AC097262.1-201ENST00000452559 548 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC073387.1-201ENST00000453261 709 ntBASIC3.33□□□□□ -1.88
SOX3P41225 RPS20P24-201ENST00000457473 361 ntBASIC3.33□□□□□ -1.88
SOX3P41225 ARPC3P2-201ENST00000457786 533 ntBASIC3.33□□□□□ -1.88
SOX3P41225 SNORD105B-201ENST00000458770 79 ntBASIC3.33□□□□□ -1.88
SOX3P41225 SNORD108-201ENST00000459332 71 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC034236.1-201ENST00000469891 373 ntBASIC3.33□□□□□ -1.88
SOX3P41225 SYPL1P1-201ENST00000473622 768 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC072039.1-201ENST00000477611 581 ntBASIC3.33□□□□□ -1.88
SOX3P41225 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.33□□□□□ -1.88
SOX3P41225 AC012170.1-201ENST00000495139 359 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC093534.1-201ENST00000504977 132 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 AC005178.1-201ENST00000508392 440 ntBASIC3.33□□□□□ -1.88
SOX3P41225 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.33□□□□□ -1.88
SOX3P41225 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 RN7SKP13-201ENST00000515933 244 ntBASIC3.33□□□□□ -1.88
SOX3P41225 SNORA70.18-201ENST00000516696 98 ntBASIC3.33□□□□□ -1.88
SOX3P41225 RNU6-759P-201ENST00000516740 103 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC087373.1-201ENST00000524920 491 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.33□□□□□ -1.88
SOX3P41225 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.33□□□□□ -1.88
SOX3P41225 AC107954.1-201ENST00000565906 727 ntBASIC3.33□□□□□ -1.88
SOX3P41225 MIR5186-201ENST00000577504 120 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 AC121247.2-201ENST00000604776 136 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC010738.1-201ENST00000604970 987 ntBASIC3.33□□□□□ -1.88
SOX3P41225 U3.45-201ENST00000607547 219 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AL357080.1-201ENST00000617394 239 ntBASIC3.33□□□□□ -1.88
SOX3P41225 CR381572.1-201ENST00000625098 102 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 AC099063.3-201ENST00000642066 185 ntBASIC3.33□□□□□ -1.88
SOX3P41225 AL022578.1-201ENST00000439330 1433 ntBASIC3.33□□□□□ -1.88
SOX3P41225 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
SOX3P41225 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SOX3P41225 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.33□□□□□ -1.88
SOX3P41225 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SOX3P41225 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SOX3P41225 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX3P41225 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX3P41225 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 RNA5SP119-201ENST00000362715 117 ntBASIC3.32□□□□□ -1.88
SOX3P41225 Y_RNA.302-201ENST00000364997 102 ntBASIC3.32□□□□□ -1.88
SOX3P41225 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX3P41225 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 RNU6-723P-201ENST00000383973 107 ntBASIC3.32□□□□□ -1.88
SOX3P41225 MIR218-2-201ENST00000385006 110 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL031679.1-201ENST00000400616 525 ntBASIC3.32□□□□□ -1.88
SOX3P41225 RPL23AP39-201ENST00000415533 405 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AC090960.1-201ENST00000421072 306 ntBASIC3.32□□□□□ -1.88
SOX3P41225 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 AL390023.1-201ENST00000428836 262 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL590233.1-201ENST00000430017 456 ntBASIC3.32□□□□□ -1.88
SOX3P41225 EZH2P1-201ENST00000431167 291 ntBASIC3.32□□□□□ -1.88
SOX3P41225 USP9YP7-201ENST00000436723 430 ntBASIC3.32□□□□□ -1.88
SOX3P41225 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX3P41225 MTND5P14-201ENST00000441481 1267 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX3P41225 OR6C5P-201ENST00000452388 923 ntBASIC3.32□□□□□ -1.88
SOX3P41225 USP9YP32-201ENST00000452432 430 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AL445669.2-201ENST00000454425 421 ntBASIC3.32□□□□□ -1.88
SOX3P41225 snoU13.3-201ENST00000459441 104 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AP001992.1-205ENST00000462248 379 ntBASIC3.32□□□□□ -1.88
SOX3P41225 RPS3AP43-201ENST00000479743 781 ntBASIC3.32□□□□□ -1.88
SOX3P41225 FAM172BP-201ENST00000487497 1089 ntBASIC3.32□□□□□ -1.88
SOX3P41225 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.32□□□□□ -1.88
SOX3P41225 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX3P41225 RNA5SP309-201ENST00000516670 106 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX3P41225 AC087276.1-201ENST00000529659 480 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AP003385.6-201ENST00000531603 374 ntBASIC3.32□□□□□ -1.88
SOX3P41225 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX3P41225 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX3P41225 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SOX3P41225 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.32□□□□□ -1.88
SOX3P41225 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.32□□□□□ -1.88
SOX3P41225 AL669831.4-202ENST00000590817 238 ntBASIC3.32□□□□□ -1.88
SOX3P41225 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.32□□□□□ -1.88
SOX3P41225 AC013444.2-201ENST00000603317 787 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms