Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC9P31274 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HOXC9P31274 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC9P31274 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 AC117529.2-201ENST00000512159 2068 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC073325.2-201ENST00000339545 159 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 MIR22-201ENST00000362190 85 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 MIR649-201ENST00000384843 97 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 UBE2V1P2-201ENST00000397758 440 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 RSL24D1P4-201ENST00000400938 484 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC073264.1-201ENST00000411508 416 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC9P31274 AC096632.1-201ENST00000427395 310 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 RPS25P9-201ENST00000435591 252 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXC9P31274 AL354941.1-201ENST00000438600 464 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 MTCYBP34-201ENST00000439552 670 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 ART2BP-201ENST00000453501 499 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXC9P31274 AC117440.1-201ENST00000474107 571 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC004924.1-201ENST00000480160 781 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 RPS3AP22-201ENST00000488297 769 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 OR2A20P-203ENST00000498397 1268 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC9P31274 HMGB1P28-201ENST00000507778 552 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXC9P31274 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HOXC9P31274 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 PTP4A1P6-201ENST00000531034 478 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 SLC2A13P1-201ENST00000531560 322 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC022882.1-201ENST00000532142 501 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC9P31274 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC9P31274 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 ELOCP32-201ENST00000548625 324 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC074029.1-201ENST00000552531 1044 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC9P31274 AL512347.1-201ENST00000566420 503 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AP001521.1-201ENST00000609150 300 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 OR6R2P-201ENST00000609216 300 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AL450489.1-201ENST00000612071 468 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AP000676.3-201ENST00000623299 569 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 AC120349.2-201ENST00000625002 298 ntBASIC4.11□□□□□ -1.75
HOXC9P31274 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC9P31274 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC9P31274 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXC9P31274 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC9P31274 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC9P31274 AL355596.1-201ENST00000565399 3996 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AL139811.1-201ENST00000424779 2299 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC000403.1-201ENST00000613696 3585 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC9P31274 OR5J1P-201ENST00000313544 939 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXC9P31274 RNU6-1243P-201ENST00000364028 107 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC9P31274 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC9P31274 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXC9P31274 RPS3AP9-201ENST00000417027 792 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXC9P31274 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AL135938.1-201ENST00000443141 297 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 OR6K5P-201ENST00000447050 945 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 MTCO1P48-201ENST00000448024 1096 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC9P31274 AL109741.2-201ENST00000455561 343 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AP000893.1-201ENST00000474462 794 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC9P31274 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXC9P31274 AC091826.1-201ENST00000514065 313 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC026801.2-201ENST00000515352 425 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC9P31274 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC9P31274 RPL12P50-201ENST00000603116 116 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC103881.1-201ENST00000603476 538 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC006270.3-201ENST00000605967 1036 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AL607023.1-201ENST00000620045 248 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 AC091903.1-201ENST00000624322 454 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC9P31274 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC9P31274 SGO1P2-201ENST00000429458 1589 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 MTND5P28-201ENST00000438005 1594 ntBASIC4.1□□□□□ -1.75
HOXC9P31274 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC9P31274 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
HOXC9P31274 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
HOXC9P31274 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms