Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.47□□□□□ -1.53
MSX1P28360 MIR1244-3-201ENST00000635744 85 ntBASIC5.47□□□□□ -1.53
MSX1P28360 MIR1244-2-201ENST00000636449 85 ntBASIC5.47□□□□□ -1.53
MSX1P28360 MIR1244-4-202ENST00000636813 85 ntBASIC5.47□□□□□ -1.53
MSX1P28360 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.47□□□□□ -1.53
MSX1P28360 AC011504.1-201ENST00000623331 4103 ntBASIC5.47□□□□□ -1.53
MSX1P28360 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 AC007842.1-201ENST00000597336 2039 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.46□□□□□ -1.53
MSX1P28360 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
MSX1P28360 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
MSX1P28360 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
MSX1P28360 SAGE4P-201ENST00000442271 3381 ntBASIC5.46□□□□□ -1.53
MSX1P28360 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.46□□□□□ -1.53
MSX1P28360 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX1P28360 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX1P28360 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 Y_RNA.200-201ENST00000364018 102 ntBASIC5.46□□□□□ -1.54
MSX1P28360 MIR628-201ENST00000385229 95 ntBASIC5.46□□□□□ -1.54
MSX1P28360 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
MSX1P28360 AL603910.2-201ENST00000407268 136 ntBASIC5.46□□□□□ -1.54
MSX1P28360 EIF4EP2-201ENST00000422816 654 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC099677.3-201ENST00000427081 395 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC073063.1-201ENST00000434352 607 ntBASIC5.46□□□□□ -1.54
MSX1P28360 CYCSP12-201ENST00000437729 300 ntBASIC5.46□□□□□ -1.54
MSX1P28360 TMSB4XP3-201ENST00000445144 114 ntBASIC5.46□□□□□ -1.54
MSX1P28360 ACA64.4-201ENST00000459070 127 ntBASIC5.46□□□□□ -1.54
MSX1P28360 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX1P28360 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX1P28360 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX1P28360 RN7SKP60-201ENST00000516985 239 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX1P28360 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
MSX1P28360 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.46□□□□□ -1.54
MSX1P28360 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
MSX1P28360 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.46□□□□□ -1.54
MSX1P28360 CR383656.7-201ENST00000548164 174 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC051619.2-201ENST00000559063 397 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX1P28360 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX1P28360 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 AC067852.3-201ENST00000589177 561 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC007566.2-201ENST00000603642 413 ntBASIC5.46□□□□□ -1.54
MSX1P28360 BX284668.6-201ENST00000606899 438 ntBASIC5.46□□□□□ -1.54
MSX1P28360 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX1P28360 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
MSX1P28360 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
MSX1P28360 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX1P28360 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX1P28360 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
MSX1P28360 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX1P28360 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 EOGT-210ENST00000615922 1931 ntBASIC5.45□□□□□ -1.54
MSX1P28360 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX1P28360 RNA5SP242-201ENST00000364171 118 ntBASIC5.45□□□□□ -1.54
MSX1P28360 RNU1-59P-201ENST00000364829 162 ntBASIC5.45□□□□□ -1.54
MSX1P28360 Y_RNA.506-201ENST00000384494 102 ntBASIC5.45□□□□□ -1.54
MSX1P28360 SNORD73A-201ENST00000386062 65 ntBASIC5.45□□□□□ -1.54
MSX1P28360 AC016739.1-201ENST00000405359 345 ntBASIC5.45□□□□□ -1.54
MSX1P28360 RNU6-130P-201ENST00000411112 103 ntBASIC5.45□□□□□ -1.54
MSX1P28360 Y_RNA.793-201ENST00000411222 111 ntBASIC5.45□□□□□ -1.54
MSX1P28360 RPL35AP3-201ENST00000414680 288 ntBASIC5.45□□□□□ -1.54
MSX1P28360 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.45□□□□□ -1.54
MSX1P28360 MTCO3P29-201ENST00000432119 779 ntBASIC5.45□□□□□ -1.54
MSX1P28360 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX1P28360 CYCSP43-201ENST00000438233 310 ntBASIC5.45□□□□□ -1.54
MSX1P28360 AC098831.1-201ENST00000440661 216 ntBASIC5.45□□□□□ -1.54
MSX1P28360 SDC4P-201ENST00000453285 601 ntBASIC5.45□□□□□ -1.54
MSX1P28360 snoU109.4-201ENST00000458953 143 ntBASIC5.45□□□□□ -1.54
MSX1P28360 AC114781.3-201ENST00000512083 142 ntBASIC5.45□□□□□ -1.54
MSX1P28360 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX1P28360 RFPL4AP5-201ENST00000514977 504 ntBASIC5.45□□□□□ -1.54
MSX1P28360 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX1P28360 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.45□□□□□ -1.54
MSX1P28360 AC103783.1-201ENST00000520506 373 ntBASIC5.45□□□□□ -1.54
MSX1P28360 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX1P28360 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 AC126177.3-201ENST00000551839 688 ntBASIC5.45□□□□□ -1.54
MSX1P28360 TXNP4-201ENST00000575018 310 ntBASIC5.45□□□□□ -1.54
MSX1P28360 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX1P28360 AC007619.2-201ENST00000605743 379 ntBASIC5.45□□□□□ -1.54
MSX1P28360 MIR6793-201ENST00000612376 63 ntBASIC5.45□□□□□ -1.54
MSX1P28360 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms