Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC3O75056 AL451007.1-201ENST00000595491 289 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC021749.1-201ENST00000604322 607 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC3O75056 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC006386.2-201ENST00000624491 75 ntBASIC3.27□□□□□ -1.89
SDC3O75056 AC012005.1-201ENST00000624575 75 ntBASIC3.27□□□□□ -1.89
SDC3O75056 CYP3A51P-201ENST00000633513 256 ntBASIC3.27□□□□□ -1.89
SDC3O75056 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
SDC3O75056 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC3O75056 AC005183.1-201ENST00000603687 1979 ntBASIC3.27□□□□□ -1.89
SDC3O75056 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
SDC3O75056 AC107982.1-201ENST00000507171 1300 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC068647.1-201ENST00000489539 2265 ntBASIC3.26□□□□□ -1.89
SDC3O75056 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
SDC3O75056 RPL23AP57-201ENST00000332361 466 ntBASIC3.26□□□□□ -1.89
SDC3O75056 RNU6-283P-201ENST00000364788 107 ntBASIC3.26□□□□□ -1.89
SDC3O75056 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC3O75056 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SDC3O75056 U3.26-201ENST00000391236 204 ntBASIC3.26□□□□□ -1.89
SDC3O75056 U3.29-201ENST00000391296 212 ntBASIC3.26□□□□□ -1.89
SDC3O75056 ARF4P3-201ENST00000397387 509 ntBASIC3.26□□□□□ -1.89
SDC3O75056 UBA52P6-201ENST00000399822 382 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AL161449.1-201ENST00000414531 1199 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC092447.6-201ENST00000414578 210 ntBASIC3.26□□□□□ -1.89
SDC3O75056 RPS3AP37-201ENST00000419176 745 ntBASIC3.26□□□□□ -1.89
SDC3O75056 GTF2IP23-201ENST00000423746 351 ntBASIC3.26□□□□□ -1.89
SDC3O75056 SETP5-201ENST00000437270 562 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC3O75056 RABEPKP1-201ENST00000440529 1026 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC3O75056 MTCYBP11-201ENST00000447254 1109 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.26□□□□□ -1.89
SDC3O75056 AC006445.1-201ENST00000491925 405 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AC112198.1-201ENST00000505369 1220 ntBASIC3.26□□□□□ -1.89
SDC3O75056 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 PCBP2P3-201ENST00000509726 843 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AP000926.4-201ENST00000527351 454 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC3O75056 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.26□□□□□ -1.89
SDC3O75056 AC004024.1-201ENST00000549244 247 ntBASIC3.26□□□□□ -1.89
SDC3O75056 EEF1B2P4-201ENST00000551398 348 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.26□□□□□ -1.89
SDC3O75056 AC009464.1-201ENST00000615731 469 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC3O75056 AC095031.1-201ENST00000623685 672 ntBASIC3.26□□□□□ -1.89
SDC3O75056 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.26□□□□□ -1.89
SDC3O75056 SNORA50A-202ENST00000629536 136 ntBASIC3.26□□□□□ -1.89
SDC3O75056 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.26□□□□□ -1.89
SDC3O75056 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
SDC3O75056 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
SDC3O75056 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SDC3O75056 MFSD8-233ENST00000641482 4860 ntBASIC3.26□□□□□ -1.89
SDC3O75056 AL356274.2-201ENST00000624379 3752 ntBASIC3.26□□□□□ -1.89
SDC3O75056 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.26□□□□□ -1.89
SDC3O75056 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 AL049780.3-201ENST00000624612 1583 ntBASIC3.25□□□□□ -1.89
SDC3O75056 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC3O75056 AC109315.1-201ENST00000584143 1347 ntBASIC3.25□□□□□ -1.89
SDC3O75056 ZNF807-201ENST00000328088 1707 ntBASIC3.25□□□□□ -1.89
SDC3O75056 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
SDC3O75056 RNU5D-1-201ENST00000363299 116 ntBASIC3.25□□□□□ -1.89
SDC3O75056 MIR591-201ENST00000385290 95 ntBASIC3.25□□□□□ -1.89
SDC3O75056 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 RNU4-65P-201ENST00000410473 140 ntBASIC3.25□□□□□ -1.89
SDC3O75056 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.25□□□□□ -1.89
SDC3O75056 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SDC3O75056 MTCO2P23-201ENST00000425216 680 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC079780.1-201ENST00000428259 207 ntBASIC3.25□□□□□ -1.89
SDC3O75056 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 MTND2P19-201ENST00000449129 1012 ntBASIC3.25□□□□□ -1.89
SDC3O75056 ZNF886P-201ENST00000450781 723 ntBASIC3.25□□□□□ -1.89
SDC3O75056 SSXP4-201ENST00000451349 245 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC092757.1-201ENST00000467293 467 ntBASIC3.25□□□□□ -1.89
SDC3O75056 HMGB1P25-201ENST00000468402 607 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC011979.1-201ENST00000472300 483 ntBASIC3.25□□□□□ -1.89
SDC3O75056 RPS27AP1-201ENST00000475545 471 ntBASIC3.25□□□□□ -1.89
SDC3O75056 RPS3AP43-201ENST00000479743 781 ntBASIC3.25□□□□□ -1.89
SDC3O75056 RPS3AP50-201ENST00000487064 803 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC134050.1-201ENST00000495088 933 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC010460.2-201ENST00000509054 677 ntBASIC3.25□□□□□ -1.89
SDC3O75056 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AC090136.1-201ENST00000520009 240 ntBASIC3.25□□□□□ -1.89
SDC3O75056 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.25□□□□□ -1.89
SDC3O75056 AC005832.3-201ENST00000537929 631 ntBASIC3.25□□□□□ -1.89
SDC3O75056 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.25□□□□□ -1.89
SDC3O75056 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.25□□□□□ -1.89
SDC3O75056 MTND1P8-201ENST00000571424 950 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms