Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MTCO2P32-201ENST00000514865 403 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 Y_RNA.717-201ENST00000517106 92 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RN7SKP289-201ENST00000517244 295 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC023538.1-201ENST00000534576 736 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 SYF2P1-201ENST00000550658 413 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AL512347.1-201ENST00000566420 503 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 MAGOH2P-202ENST00000584384 429 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC024220.1-201ENST00000603675 484 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AP002907.1-201ENST00000606361 1430 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC069200.1-201ENST00000609511 323 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 VIS1.1-201ENST00000610517 203 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 MTND2P41-201ENST00000637599 773 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC032011.1-201ENST00000611703 1549 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC002546.1-201ENST00000588041 2504 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 SNORD113-6-201ENST00000363345 75 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 RNU1-33P-201ENST00000364249 162 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 PTMAP5-201ENST00000393073 333 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 MTND1P32-201ENST00000433043 938 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AL357552.1-201ENST00000445254 415 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC034236.1-201ENST00000469891 373 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 RPL7P18-201ENST00000478965 734 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC093663.1-201ENST00000497190 394 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC006499.2-201ENST00000513470 337 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 IGKV2-23-201ENST00000518729 323 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 PDCL2P2-201ENST00000533651 189 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AL121603.1-201ENST00000553815 142 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 DUXAP1-201ENST00000556632 463 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 HSPE1P3-201ENST00000559254 309 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC087465.1-201ENST00000560574 245 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC009712.1-201ENST00000564938 316 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC128687.1-201ENST00000605304 619 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC006329.2-201ENST00000611491 394 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC012314.7-201ENST00000619693 93 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC244100.1-202ENST00000621554 382 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 AC040168.1-201ENST00000623594 991 ntBASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CPSF3Q9UKF6 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 SNORA63.1-201ENST00000362493 131 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 DHFRP6-201ENST00000401776 268 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 MIR1284-201ENST00000408337 120 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 MTCO2P21-201ENST00000419780 677 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC006960.1-201ENST00000419980 153 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AL445669.2-201ENST00000454425 421 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AP000563.1-201ENST00000490865 758 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 FCF1P3-201ENST00000496394 590 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 XKRY-201ENST00000510392 1100 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AL139174.1-201ENST00000531489 886 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 BNIP3P33-201ENST00000598912 569 ntBASIC3.72□□□□□ -1.81
CPSF3Q9UKF6 RPL23AP92-201ENST00000603609 255 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 245.1 ms