Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC243773.3-201ENST00000613270 256 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AC100793.4-201ENST00000613683 429 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 AL442067.2-201ENST00000614033 363 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 MIR3651-201ENST00000630427 90 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LHX3Q9UBR4 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.27□□□□□ -1.89
LHX3Q9UBR4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC073346.2-201ENST00000624724 2058 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC010733.2-201ENST00000589496 5702 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 Y_RNA.333-201ENST00000365274 102 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 Z98941.1-201ENST00000407764 100 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 RNA5SP129-201ENST00000410276 118 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC068533.2-201ENST00000411872 306 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AL513175.2-201ENST00000422071 443 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 NANOGP5-201ENST00000424456 877 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC092648.1-201ENST00000425870 423 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AL662791.1-201ENST00000441992 928 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 Z99127.3-201ENST00000448158 395 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 RPL7P52-201ENST00000449200 742 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 SUMO2P2-201ENST00000456482 255 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 DUXAP8-207ENST00000456786 622 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 HMGN2P16-201ENST00000456802 261 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC004801.2-202ENST00000463559 283 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 RN7SL504P-201ENST00000494496 287 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC134050.1-201ENST00000495088 933 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC114981.1-201ENST00000503897 678 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 HMGB3P15-201ENST00000507326 574 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 TPT1P8-201ENST00000510120 555 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AP001269.3-201ENST00000588718 329 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 DUXAP10-204ENST00000612052 616 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC090772.4-201ENST00000623599 362 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 AP002907.1-201ENST00000606361 1430 ntBASIC3.26□□□□□ -1.89
LHX3Q9UBR4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LHX3Q9UBR4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MTCO2P8-201ENST00000412213 658 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MTND2P5-201ENST00000432656 1006 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 TRGVB-201ENST00000453257 471 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 RPL18AP17-201ENST00000455326 198 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC109925.1-201ENST00000478069 331 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC090453.1-201ENST00000495560 436 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 TMEM251P1-201ENST00000503717 318 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 FABP5P12-201ENST00000515543 389 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 RNU6-583P-201ENST00000516012 92 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 HSPA8P13-201ENST00000523715 472 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC006518.1-201ENST00000541449 943 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC091515.1-201ENST00000548110 679 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC023813.2-201ENST00000564321 469 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MIR5004-201ENST00000579078 107 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MTCO2P2-201ENST00000591258 225 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 BNIP3P40-201ENST00000596017 556 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC245884.10-201ENST00000597355 337 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 MTND3P19-201ENST00000603825 345 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC103710.3-201ENST00000608157 948 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AL592295.2-201ENST00000612578 206 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 uc_338.25-201ENST00000613756 156 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AF117829.1-206ENST00000621883 3802 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC004009.2-201ENST00000623016 728 ntBASIC3.25□□□□□ -1.89
LHX3Q9UBR4 AC026422.1-201ENST00000623961 452 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms