Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP28Q96RU2 ZNF826P-207ENST00000622273 1910 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AP000776.1-201ENST00000530032 1663 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USP28Q96RU2 RNU4-40P-201ENST00000364351 143 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 ATP5F1P3-201ENST00000397213 657 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL583834.1-201ENST00000406943 343 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL139098.1-201ENST00000407291 389 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 RNU2-42P-201ENST00000410697 113 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 DPRXP1-201ENST00000426312 460 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC010881.1-201ENST00000433830 235 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 OR6K5P-201ENST00000447050 945 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC104978.1-201ENST00000449387 391 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL133217.1-201ENST00000450980 425 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 RFC5P1-201ENST00000454419 874 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 ATG12P2-201ENST00000456830 416 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.63□□□□□ -1.83
USP28Q96RU2 FAM133DP-201ENST00000464802 691 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC108734.3-201ENST00000481241 1165 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 RN7SL293P-201ENST00000481765 281 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 VPS26AP1-201ENST00000483197 979 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC006499.5-201ENST00000505037 514 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 MTCYBP16-201ENST00000509187 1129 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 SAP18P1-201ENST00000512058 390 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 PHBP14-201ENST00000512887 367 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 RN7SKP31-201ENST00000516354 278 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 RNA5SP135-201ENST00000517019 125 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC087373.1-201ENST00000524920 491 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AP001317.1-201ENST00000531194 960 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.63□□□□□ -1.83
USP28Q96RU2 EIF5A2P1-201ENST00000564027 460 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 MIR3690-201ENST00000580266 75 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC013444.2-201ENST00000603317 787 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC011468.4-201ENST00000603942 409 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 IGHV3-29-201ENST00000604817 344 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL009028.1-201ENST00000604895 802 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL451074.6-201ENST00000608512 729 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC097478.2-201ENST00000610572 514 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 AL161637.1-201ENST00000622380 412 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC092184.1-201ENST00000625042 715 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 AC091152.2-201ENST00000591628 2569 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AL353746.1-201ENST00000566293 6881 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP28Q96RU2 MTND5P28-201ENST00000438005 1594 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 AC138915.3-201ENST00000562908 1389 ntBASIC3.63□□□□□ -1.83
USP28Q96RU2 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 Z99496.1-201ENST00000469424 1477 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.62□□□□□ -1.83
USP28Q96RU2 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP28Q96RU2 RNA5SP295-201ENST00000362655 121 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 RNU5D-1-201ENST00000363299 116 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 SNORD116-2-201ENST00000384274 95 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 SNORD116-6-201ENST00000384711 96 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 SNORA46-201ENST00000384762 135 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AL049545.1-201ENST00000401856 572 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AL121972.1-201ENST00000402023 252 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AL357075.1-201ENST00000404107 726 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AL138880.1-201ENST00000405824 642 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AL133264.1-201ENST00000407157 562 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 RPL23AP47-201ENST00000408017 460 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 RNU2-71P-201ENST00000411395 189 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 MTND2P18-201ENST00000419962 1030 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.62□□□□□ -1.83
USP28Q96RU2 USP9YP26-201ENST00000421008 661 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 MRPS36P1-201ENST00000421291 307 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP28Q96RU2 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.62□□□□□ -1.83
USP28Q96RU2 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.62□□□□□ -1.83
USP28Q96RU2 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.62□□□□□ -1.83
USP28Q96RU2 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.62□□□□□ -1.83
USP28Q96RU2 UBE2D3P1-201ENST00000436669 444 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms