Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 RNU6-1085P-201ENST00000363576 107 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 SNORD115.1-201ENST00000391109 76 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 Y_RNA.608-201ENST00000410647 95 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 MTND2P23-201ENST00000422990 651 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC016712.1-201ENST00000431088 378 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 RPL22P17-201ENST00000438729 315 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 NIPA2P5-201ENST00000452282 464 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC008897.1-201ENST00000494006 347 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AP003122.4-201ENST00000530980 758 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AP001880.2-201ENST00000538233 448 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC040958.1-201ENST00000561102 201 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL359999.1-201ENST00000604513 294 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AC018695.5-201ENST00000605872 315 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL132765.2-201ENST00000610812 351 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL160413.1-201ENST00000622780 310 ntBASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.67□□□□□ -1.66
CLIP3Q96DZ5 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC010300.1-201ENST00000600671 5134 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 U8.3-201ENST00000363321 132 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 MIR192-201ENST00000384915 110 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RPS20P2-201ENST00000402520 389 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 U3.32-201ENST00000408116 212 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RNU6-908P-201ENST00000410160 94 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RNA5SP146-201ENST00000410743 123 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL160275.2-201ENST00000412010 394 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 PDCL2P1-201ENST00000419302 352 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC245028.1-201ENST00000423259 256 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 TAAR7P-201ENST00000436141 242 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 H2AFZP6-201ENST00000444403 394 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 TDGF1P1-201ENST00000445734 527 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL691482.1-201ENST00000453255 87 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 MTND1P9-201ENST00000453775 944 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 MTCO3P20-201ENST00000454926 688 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RPL23AP72-201ENST00000492447 435 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC114967.1-201ENST00000504890 259 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC017037.2-201ENST00000513850 890 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RN7SKP276-201ENST00000516242 268 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC007424.1-203ENST00000554613 687 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 RPL21P5-201ENST00000554662 472 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL359212.1-201ENST00000556608 614 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC012669.1-201ENST00000603209 283 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL391358.1-201ENST00000605342 190 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AL365204.3-201ENST00000612448 685 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 uc_338.18-201ENST00000615451 175 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC006504.8-201ENST00000621046 635 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC073869.10-201ENST00000642016 354 ntBASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
CLIP3Q96DZ5 AC011460.1-201ENST00000636268 1834 ntBASIC4.65□□□□□ -1.66
CLIP3Q96DZ5 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.65□□□□□ -1.66
CLIP3Q96DZ5 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms