Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MFSD8-239ENST00000641590 2479 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 RNY1P16-201ENST00000363063 111 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 U8.4-201ENST00000363626 134 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 RNA5SP335-201ENST00000363817 110 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 RNU6-1035P-201ENST00000384477 107 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 Y_RNA.541-201ENST00000384640 113 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 Y_RNA.568-201ENST00000384742 113 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AL024474.1-201ENST00000404655 591 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 RPL23AP69-201ENST00000431134 458 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC010881.1-201ENST00000433830 235 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AL162725.1-201ENST00000435405 301 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 NUTF2P7-201ENST00000453086 375 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 HMGB1P4-201ENST00000455362 567 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 RPSAP50-201ENST00000481955 852 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC093840.1-201ENST00000511599 336 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 IGKV2D-10-201ENST00000520194 281 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC023813.4-201ENST00000607580 580 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC006023.2-201ENST00000609916 167 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC068870.2-201ENST00000620635 389 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AL596275.2-204ENST00000641628 552 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 AC022164.1-201ENST00000568767 2673 ntBASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
NPAS3Q8IXF0 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
NPAS3Q8IXF0 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.84□□□□□ -1.48
NPAS3Q8IXF0 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.48
NPAS3Q8IXF0 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.84□□□□□ -1.48
NPAS3Q8IXF0 EOGT-210ENST00000615922 1931 ntBASIC5.84□□□□□ -1.48
NPAS3Q8IXF0 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 GNG5P2-201ENST00000372054 207 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 RNU6-214P-201ENST00000384130 107 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 SNORD115-46-201ENST00000390982 71 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 SNORA16.2-201ENST00000390991 127 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 RN7SKP213-201ENST00000410746 298 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 RPL12P3-201ENST00000440080 396 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AL035551.1-201ENST00000446931 348 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 CBX1P2-201ENST00000453841 458 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC108059.3-201ENST00000456388 214 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 SNORD116-28-201ENST00000516123 91 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC126177.3-201ENST00000551839 688 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 HNRNPCP4-201ENST00000571636 900 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AL138889.2-201ENST00000603883 242 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC025574.2-201ENST00000615621 514 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC007938.2-201ENST00000604666 2634 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AL034546.1-201ENST00000623740 3693 ntBASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.83□□□□□ -1.48
NPAS3Q8IXF0 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NPAS3Q8IXF0 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms