Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 TVP23CP2-201ENST00000571473 623 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AL138889.2-201ENST00000603883 242 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC011626.1-201ENST00000604710 562 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC009570.1-201ENST00000609599 745 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC011890.2-201ENST00000613393 294 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 AC004696.1-201ENST00000614345 607 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 ATP5A1P2-202ENST00000616464 443 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 SNHG22-203ENST00000617833 660 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 MIR6839-201ENST00000620425 113 ntBASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
UBE3DQ7Z6J8 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 HSPA8P15-201ENST00000401676 786 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RNU4-65P-201ENST00000410473 140 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RNU4-6P-201ENST00000410804 122 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 BX682237.1-201ENST00000415016 335 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RPLP0P7-201ENST00000416050 667 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC079355.1-201ENST00000421770 223 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC096644.2-201ENST00000429278 159 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC108161.1-201ENST00000461060 402 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AL133445.1-201ENST00000467051 452 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RPS24P16-201ENST00000497294 392 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-1271P-201ENST00000517049 105 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC022360.1-201ENST00000521058 340 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 DEFB108D-201ENST00000527787 222 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MYL12BP1-201ENST00000569826 507 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC008521.1-201ENST00000587471 187 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC109309.2-201ENST00000612597 332 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 CYP4F35P-202ENST00000636121 390 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 MTND5P30-201ENST00000452896 1731 ntBASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
UBE3DQ7Z6J8 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AC005005.4-201ENST00000623789 16698 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-490P-201ENST00000362985 107 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RNU1-115P-201ENST00000365329 160 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 Y_RNA.455-201ENST00000384230 98 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RNA5SP187-201ENST00000384400 119 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 MIR589-201ENST00000385238 99 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 MT-TR-201ENST00000387439 65 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 SNORA48.4-201ENST00000391089 134 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AL583834.1-201ENST00000406943 343 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AC079809.1-201ENST00000415468 276 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AL139095.3-201ENST00000419672 1203 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 HMGN2P27-201ENST00000427352 270 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RPL23AP33-201ENST00000442301 452 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 AC010655.1-201ENST00000449336 292 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RPL10P17-201ENST00000453852 316 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RPL12P25-201ENST00000455592 494 ntBASIC5.02□□□□□ -1.61
UBE3DQ7Z6J8 RNU7-167P-201ENST00000459160 62 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 185.8 ms