Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 RNU6-711P-201ENST00000517255 106 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC018630.1-201ENST00000541376 925 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 MIR4429-201ENST00000580105 73 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL606834.3-201ENST00000602615 496 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL133393.1-201ENST00000603277 287 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC024060.1-201ENST00000607052 494 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AC093010.3-201ENST00000570269 15214 ntBASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC40Q4G0X9 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC40Q4G0X9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC40Q4G0X9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 OR1S2-201ENST00000302592 978 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 U3.6-201ENST00000363622 211 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 RNU6-224P-201ENST00000384055 107 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 MIR506-201ENST00000384998 124 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 TAF9BP1-201ENST00000396646 746 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 RNU2-15P-201ENST00000410692 191 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 MRPL50P2-201ENST00000416821 482 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC097713.2-201ENST00000430199 356 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 MTND4LP10-201ENST00000435146 291 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC108860.1-201ENST00000484521 383 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AP002812.1-201ENST00000495378 474 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC110794.1-201ENST00000505816 425 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC006390.1-201ENST00000508068 283 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC026412.2-201ENST00000512270 1075 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC125611.1-201ENST00000549563 229 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 GTF2IP8-201ENST00000560687 584 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 COX6CP3-201ENST00000580869 223 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 SNORD84-203ENST00000584275 78 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 CKS1BP3-201ENST00000600888 237 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AL022067.1-201ENST00000602426 454 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 RPL23AP92-201ENST00000603609 255 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AL035411.2-201ENST00000604022 421 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC010738.1-201ENST00000604970 987 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC112220.2-201ENST00000605513 533 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC008962.1-201ENST00000605729 304 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC009237.15-201ENST00000610252 501 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC015967.1-201ENST00000619893 476 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 U6.101-201ENST00000637707 76 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC093831.2-201ENST00000624393 3427 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 SGO1P2-201ENST00000429458 1589 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 AC110774.1-201ENST00000623567 2018 ntBASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC40Q4G0X9 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 ZNF807-201ENST00000328088 1707 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 OR5H2-201ENST00000355273 945 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 Y_RNA.25-201ENST00000362528 102 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 RNU6-878P-201ENST00000384578 110 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 MIR449B-201ENST00000384995 97 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AL357075.1-201ENST00000404107 726 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 RN7SKP123-201ENST00000410732 291 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 UBE2D3P2-201ENST00000424409 445 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 DPPA2P1-201ENST00000428060 556 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 SNRPEP4-201ENST00000435815 279 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 USP9YP34-201ENST00000453983 808 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 PNPLA4P1-201ENST00000458328 305 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 RPS4XP10-201ENST00000465034 731 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms