Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 AL845331.3-202ENST00000562856 261 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 AC087481.2-201ENST00000565492 330 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 MIR98-201ENST00000606724 119 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 SNX18P1Y-201ENST00000616231 511 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 U4.5-201ENST00000617137 123 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 AC068880.5-201ENST00000624331 290 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 AC068254.2-201ENST00000623938 3577 ntBASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC144BQ3MJ40 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 SNORA7.2-201ENST00000364446 145 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 RNU6-629P-201ENST00000384061 103 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 RNU6-882P-201ENST00000391025 103 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 ELOCP4-201ENST00000420090 333 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 RPL31P35-201ENST00000431058 377 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 RPL21P112-201ENST00000434403 463 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 PSPHP1-201ENST00000450062 261 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC078817.1-201ENST00000492623 435 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC093824.1-201ENST00000508796 343 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC023141.12-201ENST00000512399 199 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 MTCYBP41-201ENST00000528913 1123 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 MIR1254-2-201ENST00000579553 63 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AP001094.1-201ENST00000579805 193 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC005255.1-201ENST00000593748 216 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL034351.1-201ENST00000605288 668 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 ARF4P1-201ENST00000605447 541 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC092794.1-201ENST00000612734 582 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC015967.1-201ENST00000619893 476 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 MIR7154-201ENST00000620673 73 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL157700.1-201ENST00000561973 1432 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AL136164.3-201ENST00000624429 3978 ntBASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC144BQ3MJ40 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RNA5SP28-201ENST00000363841 119 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RNU4-1-201ENST00000363925 141 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 SNORA57.1-201ENST00000391227 145 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 TMSB10P2-201ENST00000416049 131 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 PDSS1P1-201ENST00000422953 1114 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 TIMM9P3-201ENST00000428659 274 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AL358934.1-201ENST00000432346 324 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RPL23AP93-201ENST00000440847 484 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 NUTF2P3-201ENST00000448540 384 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC079448.1-201ENST00000449377 373 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 C1DP4-201ENST00000455429 424 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RN7SL810P-201ENST00000493031 276 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC010460.1-201ENST00000507087 466 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 RNA5SP337-201ENST00000517007 109 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 OR5G4P-201ENST00000525251 760 ntBASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC144BQ3MJ40 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms