Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RN7SL636P-201ENST00000497504 294 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC2.17□□□□□ -2.06
CHD3Q12873 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.17□□□□□ -2.06
CHD3Q12873 MTCYBP37-201ENST00000510642 1133 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 SNORD59.2-201ENST00000516873 68 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 CKS1BP7-201ENST00000522230 235 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC016727.1-205ENST00000605437 569 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHD3Q12873 AL512283.1-201ENST00000606756 1384 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RNU6-253P-201ENST00000384730 105 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 MT-TP-201ENST00000387461 68 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AL031736.2-201ENST00000426573 787 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 HMGN2P13-201ENST00000476476 274 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 RPS4XP6-201ENST00000477670 797 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 RNU4-60P-201ENST00000517239 135 ntBASIC2.17□□□□□ -2.06
CHD3Q12873 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CHD3Q12873 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.17□□□□□ -2.06
CHD3Q12873 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD3Q12873 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD3Q12873 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHD3Q12873 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CHD3Q12873 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CHD3Q12873 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CHD3Q12873 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD3Q12873 RNU1-100P-201ENST00000365255 165 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 NANOGP5-201ENST00000424456 877 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD3Q12873 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.16□□□□□ -2.06
CHD3Q12873 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CHD3Q12873 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.16□□□□□ -2.06
CHD3Q12873 AC103810.6-201ENST00000606708 136 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.16□□□□□ -2.06
CHD3Q12873 AC004696.1-201ENST00000614345 607 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 MIR7111-201ENST00000619751 72 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC079228.1-201ENST00000624774 1049 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AL121594.5-201ENST00000631724 573 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC110994.2-201ENST00000635481 492 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.16□□□□□ -2.06
CHD3Q12873 CUL1P1-201ENST00000509510 2425 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC104454.1-201ENST00000421341 1401 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC091564.4-201ENST00000533934 2194 ntBASIC2.16□□□□□ -2.06
CHD3Q12873 AC069528.2-201ENST00000624849 1991 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.06
CHD3Q12873 MIR6073-201ENST00000352083 89 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.15□□□□□ -2.06
CHD3Q12873 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.15□□□□□ -2.06
CHD3Q12873 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
CHD3Q12873 AC023424.2-201ENST00000493479 777 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 RPL21P131-201ENST00000497298 483 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.15□□□□□ -2.06
CHD3Q12873 RNU6-711P-201ENST00000517255 106 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.15□□□□□ -2.06
CHD3Q12873 OR7K1P-201ENST00000546439 926 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.15□□□□□ -2.06
CHD3Q12873 AC068313.1-201ENST00000604028 1008 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 AC015726.3-201ENST00000624501 418 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 OR4G2P-202ENST00000641004 1759 ntBASIC2.15□□□□□ -2.06
CHD3Q12873 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.15□□□□□ -2.06
CHD3Q12873 AC002543.1-201ENST00000299783 1954 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.15□□□□□ -2.07
CHD3Q12873 MIR153-1-201ENST00000384914 90 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 AC240504.1-201ENST00000395709 845 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.15□□□□□ -2.07
CHD3Q12873 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.15□□□□□ -2.07
CHD3Q12873 HMGB1P45-201ENST00000435986 653 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 AC011753.1-201ENST00000451001 220 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.15□□□□□ -2.07
CHD3Q12873 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.15□□□□□ -2.07
CHD3Q12873 AC091057.2-201ENST00000602594 792 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 AL354950.1-201ENST00000614150 568 ntBASIC2.15□□□□□ -2.07
CHD3Q12873 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CHD3Q12873 AC097714.1-201ENST00000511272 1647 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 SNORA51.2-201ENST00000364595 132 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AL162578.1-201ENST00000406202 378 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 HNRNPDP2-201ENST00000406475 478 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 Z98742.3-201ENST00000418637 326 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CHD3Q12873 RPS20P5-201ENST00000434808 360 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.14□□□□□ -2.07
CHD3Q12873 RPS12P2-201ENST00000439728 269 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC113398.2-201ENST00000507630 558 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 RNA5SP82-201ENST00000516707 92 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.14□□□□□ -2.07
CHD3Q12873 MIR4446-201ENST00000578505 67 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC008687.2-201ENST00000597865 520 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.14□□□□□ -2.07
CHD3Q12873 AC008277.2-201ENST00000605196 797 ntBASIC2.14□□□□□ -2.07
CHD3Q12873 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.14□□□□□ -2.07
CHD3Q12873 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms