Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
TFF3Q07654 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TFF3Q07654 AL161781.1-201ENST00000354277 403 ntBASIC1.85□□□□□ -2.11
TFF3Q07654 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.85□□□□□ -2.11
TFF3Q07654 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
TFF3Q07654 RNA5SP492-201ENST00000411330 114 ntBASIC1.85□□□□□ -2.11
TFF3Q07654 CYCSP49-201ENST00000420810 319 ntBASIC1.85□□□□□ -2.11
TFF3Q07654 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.85□□□□□ -2.11
TFF3Q07654 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC1.85□□□□□ -2.11
TFF3Q07654 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.85□□□□□ -2.11
TFF3Q07654 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.85□□□□□ -2.11
TFF3Q07654 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TFF3Q07654 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.85□□□□□ -2.11
TFF3Q07654 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
TFF3Q07654 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
TFF3Q07654 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TFF3Q07654 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.84□□□□□ -2.11
TFF3Q07654 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.84□□□□□ -2.11
TFF3Q07654 RNU1-109P-201ENST00000383960 147 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.84□□□□□ -2.11
TFF3Q07654 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.84□□□□□ -2.11
TFF3Q07654 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.84□□□□□ -2.11
TFF3Q07654 AL353093.1-201ENST00000441292 436 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.84□□□□□ -2.11
TFF3Q07654 AC009237.8-201ENST00000445492 379 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 AL118520.1-201ENST00000450770 291 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 ARPC3P2-201ENST00000457786 533 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 OR52A4P-203ENST00000498233 1014 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.84□□□□□ -2.11
TFF3Q07654 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.84□□□□□ -2.11
TFF3Q07654 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC1.84□□□□□ -2.11
TFF3Q07654 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
TFF3Q07654 AC068339.2-201ENST00000534395 618 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC1.84□□□□□ -2.11
TFF3Q07654 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.84□□□□□ -2.11
TFF3Q07654 AC084757.1-201ENST00000559987 490 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 AC011494.1-201ENST00000596454 237 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.84□□□□□ -2.11
TFF3Q07654 AP000942.3-201ENST00000603702 160 ntBASIC1.84□□□□□ -2.11
TFF3Q07654 CKAP2P1-201ENST00000555477 2049 ntBASIC1.84□□□□□ -2.12
TFF3Q07654 RLIMP2-201ENST00000427891 1563 ntBASIC1.84□□□□□ -2.12
TFF3Q07654 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
TFF3Q07654 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.84□□□□□ -2.12
TFF3Q07654 HSP90AA5P-201ENST00000438353 2192 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 HSPA8P4-201ENST00000511877 1920 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC1.83□□□□□ -2.12
TFF3Q07654 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TFF3Q07654 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TFF3Q07654 Y_RNA.238-201ENST00000364441 102 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 USP9YP27-201ENST00000418455 438 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.83□□□□□ -2.12
TFF3Q07654 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
TFF3Q07654 AL031659.1-201ENST00000447075 539 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 RPL7P31-201ENST00000450192 724 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 AP000873.1-201ENST00000463987 400 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 AC104435.1-201ENST00000483483 166 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.83□□□□□ -2.12
TFF3Q07654 GZMAP1-201ENST00000503054 631 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC1.83□□□□□ -2.12
TFF3Q07654 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.83□□□□□ -2.12
TFF3Q07654 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.83□□□□□ -2.12
TFF3Q07654 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC1.83□□□□□ -2.12
TFF3Q07654 AC008687.2-201ENST00000597865 520 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.83□□□□□ -2.12
TFF3Q07654 CU459211.1-201ENST00000635667 749 ntBASIC1.83□□□□□ -2.12
TFF3Q07654 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
TFF3Q07654 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
TFF3Q07654 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TFF3Q07654 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
TFF3Q07654 MTND5P28-201ENST00000438005 1594 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 AL359893.1-201ENST00000447628 1580 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
TFF3Q07654 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
TFF3Q07654 RNA5SP213-201ENST00000391031 106 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.82□□□□□ -2.12
TFF3Q07654 RPL31P45-201ENST00000419532 356 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 PTP4A1P1-201ENST00000420539 515 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 RPL7P54-201ENST00000438336 674 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.82□□□□□ -2.12
TFF3Q07654 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.82□□□□□ -2.12
TFF3Q07654 ARL4AP2-201ENST00000507378 601 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.82□□□□□ -2.12
TFF3Q07654 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
TFF3Q07654 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 AC016727.1-205ENST00000605437 569 ntBASIC1.82□□□□□ -2.12
TFF3Q07654 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC1.82□□□□□ -2.12
TFF3Q07654 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.82□□□□□ -2.12
TFF3Q07654 RNU1-17P-201ENST00000363022 152 ntBASIC1.81□□□□□ -2.12
TFF3Q07654 RN7SKP226-201ENST00000364912 300 ntBASIC1.81□□□□□ -2.12
TFF3Q07654 AL139156.1-201ENST00000412785 841 ntBASIC1.81□□□□□ -2.12
TFF3Q07654 HMGB1P11-201ENST00000413899 637 ntBASIC1.81□□□□□ -2.12
TFF3Q07654 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.81□□□□□ -2.12
TFF3Q07654 AC009965.2-201ENST00000425328 970 ntBASIC1.81□□□□□ -2.12
TFF3Q07654 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms