Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RN7SKP32-201ENST00000410167 303 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC234782.4-201ENST00000417646 1048 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC234781.4-201ENST00000419384 244 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 MTCO2P12-201ENST00000427426 682 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 CBWD4P-201ENST00000445695 655 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 RPL7P12-201ENST00000446719 750 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AL035551.1-201ENST00000446931 348 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 RNA5SP103-201ENST00000459503 118 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC083798.1-201ENST00000472671 131 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 RN7SL812P-201ENST00000493791 279 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC093278.1-201ENST00000494700 600 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 RNA5SP401-201ENST00000515920 127 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 SNORA19.2-201ENST00000516013 114 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 AC093027.1-201ENST00000546698 429 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 HSPE1P3-201ENST00000559254 309 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC120057.2-201ENST00000571520 271 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AL355375.2-201ENST00000574825 175 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 MIR3167-201ENST00000579623 85 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A3Q01955 AC007687.1-201ENST00000602704 304 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 SRGNP1-201ENST00000603392 451 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AC008966.2-201ENST00000606157 453 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.36□□□□□ -1.71
COL4A3Q01955 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A3Q01955 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A3Q01955 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
COL4A3Q01955 AP002907.1-201ENST00000606361 1430 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.36□□□□□ -1.71
COL4A3Q01955 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 AC116158.1-201ENST00000560231 2129 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL4A3Q01955 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-451P-201ENST00000362921 107 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 Y_RNA.166-201ENST00000363730 102 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 Y_RNA.381-201ENST00000365666 102 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-1279P-201ENST00000383917 103 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 RPS4XP8-201ENST00000402039 771 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU4-6P-201ENST00000410804 122 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 TPMTP2-201ENST00000414372 726 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 MTCYBP6-201ENST00000441810 138 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AL031584.1-201ENST00000447169 754 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-488P-201ENST00000515918 99 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU7-30P-201ENST00000516835 62 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A3Q01955 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC008127.2-201ENST00000549925 1075 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A3Q01955 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 MIR6500-201ENST00000622700 86 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC024940.5-201ENST00000622889 474 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC009161.2-201ENST00000624626 138 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC116096.1-201ENST00000566804 2314 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-223P-201ENST00000362830 107 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-1120P-201ENST00000362988 108 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 RNU6-225P-201ENST00000384613 103 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 MIR218-2-201ENST00000385006 110 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 MTND2P23-201ENST00000422990 651 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC018644.1-201ENST00000429934 551 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC010881.1-201ENST00000433830 235 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A3Q01955 RPL31P50-201ENST00000471002 296 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 UBA52P3-201ENST00000491303 382 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AC007991.1-201ENST00000522680 631 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AC024224.1-201ENST00000538284 609 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 PDCD5P1-201ENST00000543528 309 ntBASIC4.35□□□□□ -1.71
COL4A3Q01955 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A3Q01955 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A3Q01955 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A3Q01955 SNORD39.3-201ENST00000584451 71 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms