Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC004486.1-201ENST00000546846 233 ntBASIC3.31□□□□□ -1.88
CUX1P39880 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.31□□□□□ -1.88
CUX1P39880 AC010297.1-201ENST00000623948 149 ntBASIC3.31□□□□□ -1.88
CUX1P39880 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CUX1P39880 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
CUX1P39880 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.3□□□□□ -1.88
CUX1P39880 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.3□□□□□ -1.88
CUX1P39880 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.3□□□□□ -1.88
CUX1P39880 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CUX1P39880 MIR337-201ENST00000362281 93 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AL627390.1-201ENST00000396055 340 ntBASIC3.29□□□□□ -1.88
CUX1P39880 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.29□□□□□ -1.88
CUX1P39880 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.29□□□□□ -1.88
CUX1P39880 RNA5SP182-201ENST00000516064 82 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.29□□□□□ -1.88
CUX1P39880 MIR5089-201ENST00000580047 84 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AP004372.1-201ENST00000604842 844 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.29□□□□□ -1.88
CUX1P39880 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
CUX1P39880 MFSD8-245ENST00000641743 948 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.29□□□□□ -1.88
CUX1P39880 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CUX1P39880 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.29□□□□□ -1.88
CUX1P39880 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CUX1P39880 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CUX1P39880 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CUX1P39880 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.29□□□□□ -1.88
CUX1P39880 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.29□□□□□ -1.88
CUX1P39880 NDUFS5P3-201ENST00000450668 321 ntBASIC3.29□□□□□ -1.88
CUX1P39880 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.29□□□□□ -1.88
CUX1P39880 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.29□□□□□ -1.88
CUX1P39880 ISCA1P3-201ENST00000577104 373 ntBASIC3.29□□□□□ -1.88
CUX1P39880 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.28□□□□□ -1.88
CUX1P39880 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.28□□□□□ -1.88
CUX1P39880 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CUX1P39880 RNA5SP190-201ENST00000365222 118 ntBASIC3.28□□□□□ -1.88
CUX1P39880 RNA5SP239-201ENST00000410218 129 ntBASIC3.28□□□□□ -1.88
CUX1P39880 RNA5SP270-201ENST00000411361 118 ntBASIC3.28□□□□□ -1.88
CUX1P39880 TAF9P1-201ENST00000445421 515 ntBASIC3.28□□□□□ -1.88
CUX1P39880 TAF9P2-201ENST00000454958 515 ntBASIC3.28□□□□□ -1.88
CUX1P39880 MTAPP1-201ENST00000489154 819 ntBASIC3.28□□□□□ -1.88
CUX1P39880 RN7SKP96-201ENST00000516948 297 ntBASIC3.28□□□□□ -1.88
CUX1P39880 snoZ278.1-201ENST00000517059 112 ntBASIC3.28□□□□□ -1.88
CUX1P39880 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.28□□□□□ -1.88
CUX1P39880 AC126177.3-201ENST00000551839 688 ntBASIC3.28□□□□□ -1.88
CUX1P39880 PSMA6P4-201ENST00000603247 718 ntBASIC3.28□□□□□ -1.88
CUX1P39880 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.28□□□□□ -1.88
CUX1P39880 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CUX1P39880 SNORA25.9-201ENST00000365087 128 ntBASIC3.27□□□□□ -1.89
CUX1P39880 ATP5F1P1-201ENST00000433775 569 ntBASIC3.27□□□□□ -1.89
CUX1P39880 TRIM60P18-201ENST00000441518 828 ntBASIC3.27□□□□□ -1.89
CUX1P39880 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.27□□□□□ -1.89
CUX1P39880 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.27□□□□□ -1.89
CUX1P39880 FAM35CP-201ENST00000554755 2470 ntBASIC3.26□□□□□ -1.89
CUX1P39880 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CUX1P39880 Y_RNA.122-201ENST00000363331 96 ntBASIC3.26□□□□□ -1.89
CUX1P39880 RNU6-178P-201ENST00000384631 104 ntBASIC3.26□□□□□ -1.89
CUX1P39880 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.26□□□□□ -1.89
CUX1P39880 YWHAZP7-201ENST00000436906 631 ntBASIC3.26□□□□□ -1.89
CUX1P39880 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.26□□□□□ -1.89
CUX1P39880 FAM92A1P1-201ENST00000528023 890 ntBASIC3.26□□□□□ -1.89
CUX1P39880 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.26□□□□□ -1.89
CUX1P39880 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.26□□□□□ -1.89
CUX1P39880 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.26□□□□□ -1.89
CUX1P39880 AP000787.2-201ENST00000604432 568 ntBASIC3.26□□□□□ -1.89
CUX1P39880 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CUX1P39880 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.26□□□□□ -1.89
CUX1P39880 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.26□□□□□ -1.89
CUX1P39880 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
CUX1P39880 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CUX1P39880 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CUX1P39880 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.25□□□□□ -1.89
CUX1P39880 HMGB1P1-201ENST00000522557 636 ntBASIC3.25□□□□□ -1.89
CUX1P39880 AC087241.2-201ENST00000535801 324 ntBASIC3.25□□□□□ -1.89
CUX1P39880 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.25□□□□□ -1.89
CUX1P39880 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.25□□□□□ -1.89
CUX1P39880 AL627309.6-201ENST00000606857 840 ntBASIC3.25□□□□□ -1.89
CUX1P39880 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CUX1P39880 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CUX1P39880 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CUX1P39880 AL445685.2-201ENST00000422551 342 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AL645939.1-201ENST00000453429 797 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 Y_RNA.670-201ENST00000516255 105 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.24□□□□□ -1.89
CUX1P39880 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.24□□□□□ -1.89
CUX1P39880 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 AL359821.1-201ENST00000605519 182 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 AC084768.2-201ENST00000622736 221 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 AC244517.1-201ENST00000606030 2086 ntBASIC3.24□□□□□ -1.89
CUX1P39880 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CUX1P39880 SNORD6-201ENST00000365444 73 ntBASIC3.24□□□□□ -1.89
CUX1P39880 RPL7P53-201ENST00000421245 739 ntBASIC3.24□□□□□ -1.89
CUX1P39880 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.24□□□□□ -1.89
CUX1P39880 AC108078.2-201ENST00000510750 236 ntBASIC3.24□□□□□ -1.89
CUX1P39880 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms