Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC025588.3-201ENST00000604182 274 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC091965.4-201ENST00000607691 587 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC091834.1-201ENST00000614543 472 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 AC008250.2-201ENST00000615261 205 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
SMARCA1P28370 AC099654.12-201ENST00000639868 649 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.68□□□□□ -1.66
SMARCA1P28370 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.68□□□□□ -1.66
SMARCA1P28370 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SMARCA1P28370 IQCB2P-201ENST00000401788 1633 ntBASIC4.68□□□□□ -1.66
SMARCA1P28370 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SMARCA1P28370 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SMARCA1P28370 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SMARCA1P28370 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SMARCA1P28370 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SMARCA1P28370 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
SMARCA1P28370 SPRR2C-201ENST00000290702 219 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 U3.15-201ENST00000365398 212 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 SNORD82-201ENST00000365530 70 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 RNU6-730P-201ENST00000383954 104 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 Y_RNA.582-201ENST00000391023 95 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.67□□□□□ -1.66
SMARCA1P28370 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC012065.2-201ENST00000421295 375 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 BX890604.2-201ENST00000427883 474 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 OR2B8P-201ENST00000432841 938 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 CKS1BP5-201ENST00000434172 273 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC091862.1-201ENST00000438016 1100 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 DNAJC19P4-201ENST00000440115 345 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.67□□□□□ -1.66
SMARCA1P28370 snoU109.1-201ENST00000459339 135 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC104563.1-201ENST00000476147 376 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.67□□□□□ -1.66
SMARCA1P28370 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 NDUFB4P2-201ENST00000509515 391 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 IGKV2-38-201ENST00000517443 247 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.67□□□□□ -1.66
SMARCA1P28370 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.67□□□□□ -1.66
SMARCA1P28370 BNIP3P5-201ENST00000562290 498 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AC090578.1-201ENST00000604955 591 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 MIR6868-201ENST00000611215 58 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC108479.2-201ENST00000617314 601 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC006065.5-201ENST00000623427 349 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 AC099654.13-201ENST00000639774 207 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SMARCA1P28370 MTND5P26-201ENST00000426018 1752 ntBASIC4.67□□□□□ -1.66
SMARCA1P28370 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.67□□□□□ -1.66
SMARCA1P28370 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.67□□□□□ -1.66
SMARCA1P28370 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SMARCA1P28370 AL049780.3-201ENST00000624612 1583 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC097714.1-201ENST00000511272 1647 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 XIAPP3-201ENST00000312918 795 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SMARCA1P28370 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SMARCA1P28370 SNORA3C-201ENST00000408792 125 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 RN7SKP263-201ENST00000411194 309 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 RPS3AP3-201ENST00000411933 242 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.66□□□□□ -1.66
SMARCA1P28370 MTCYBP45-201ENST00000435243 565 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 RPL21P89-201ENST00000444021 467 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.66□□□□□ -1.66
SMARCA1P28370 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.66□□□□□ -1.66
SMARCA1P28370 ACTR3P3-201ENST00000480448 893 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AL358832.1-201ENST00000497800 389 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC112204.1-201ENST00000502591 103 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC093677.1-201ENST00000514414 678 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 IGKV2D-36-201ENST00000518643 226 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 OR5G4P-201ENST00000525251 760 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.66□□□□□ -1.66
SMARCA1P28370 OR8R1P-201ENST00000543943 764 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 YPEL5P3-201ENST00000547227 352 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC007424.1-203ENST00000554613 687 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AL353997.4-201ENST00000586196 166 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 TPMTP1-201ENST00000592307 737 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 AC068790.5-201ENST00000602741 355 ntBASIC4.66□□□□□ -1.66
SMARCA1P28370 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.66□□□□□ -1.66
SMARCA1P28370 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms