Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC140059.1-201ENST00000489238 361 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.2□□□□□ -1.58
COL8A1P27658 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 ACA59.1-201ENST00000515966 143 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.2□□□□□ -1.58
COL8A1P27658 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.2□□□□□ -1.58
COL8A1P27658 HMGN2P36-201ENST00000529541 409 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.2□□□□□ -1.58
COL8A1P27658 AC010186.2-204ENST00000537668 439 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL8A1P27658 MIR4697-201ENST00000582977 78 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 MIR378J-201ENST00000611988 109 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AC034102.8-201ENST00000615146 484 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.2□□□□□ -1.58
COL8A1P27658 MIR8080-201ENST00000622224 89 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.2□□□□□ -1.58
COL8A1P27658 AL132640.3-201ENST00000630473 177 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL8A1P27658 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL8A1P27658 AC006600.2-201ENST00000624834 2506 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.2□□□□□ -1.58
COL8A1P27658 SRRM1P3-201ENST00000426911 2678 ntBASIC5.2□□□□□ -1.58
COL8A1P27658 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.19□□□□□ -1.58
COL8A1P27658 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.19□□□□□ -1.58
COL8A1P27658 AC245100.2-201ENST00000454544 1679 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 RBBP8P1-201ENST00000449447 1844 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC138393.1-203ENST00000327086 343 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 RNU6-1255P-201ENST00000363434 112 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 Y_RNA.292-201ENST00000364904 97 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL8A1P27658 RNU6-131P-201ENST00000391144 107 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 FAR2P2-201ENST00000413041 594 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 RPL23AP38-201ENST00000423801 469 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC093106.2-201ENST00000428212 385 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC007389.2-201ENST00000434630 306 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AL590399.4-201ENST00000436561 601 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.19□□□□□ -1.58
COL8A1P27658 SNORD121B-201ENST00000458838 81 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC114982.1-201ENST00000469402 321 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 RPL21P103-201ENST00000479921 488 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC010469.2-201ENST00000496412 480 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 RPS4XP20-201ENST00000505751 772 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 RN7SKP96-201ENST00000516948 297 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 RNU6-844P-201ENST00000517175 102 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.19□□□□□ -1.58
COL8A1P27658 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.19□□□□□ -1.58
COL8A1P27658 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.19□□□□□ -1.58
COL8A1P27658 RPL23AP84-201ENST00000571193 464 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 MIR4293-201ENST00000584305 78 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.19□□□□□ -1.58
COL8A1P27658 AC005520.5-201ENST00000613926 164 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.19□□□□□ -1.58
COL8A1P27658 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL8A1P27658 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL8A1P27658 AL596275.2-204ENST00000641628 552 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL8A1P27658 AL592148.3-201ENST00000608771 2646 ntBASIC5.19□□□□□ -1.58
COL8A1P27658 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.19□□□□□ -1.58
COL8A1P27658 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.19□□□□□ -1.58
COL8A1P27658 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 GUCY1B2-204ENST00000531898 1979 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 RLIMP1-201ENST00000339626 1680 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
COL8A1P27658 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL8A1P27658 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
COL8A1P27658 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL8A1P27658 TTC41P-205ENST00000551270 3963 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 Y_RNA.44-201ENST00000362676 108 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 U8.4-201ENST00000363626 134 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 SNORA70H-201ENST00000383910 135 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 Y_RNA.441-201ENST00000384123 112 ntBASIC5.18□□□□□ -1.58
COL8A1P27658 SNORA70J-201ENST00000384182 135 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms