Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
ATF4P18848 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
ATF4P18848 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
ATF4P18848 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
ATF4P18848 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
ATF4P18848 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 Y_RNA.67-201ENST00000362870 100 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RNU1-65P-201ENST00000363919 148 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RNU6-512P-201ENST00000364438 103 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RNU6-45P-201ENST00000384471 107 ntBASIC4.75□□□□□ -1.65
ATF4P18848 Y_RNA.534-201ENST00000384599 112 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RPS4XP7-201ENST00000406274 780 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL139805.1-201ENST00000407837 289 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RN7SKP144-201ENST00000411108 279 ntBASIC4.75□□□□□ -1.65
ATF4P18848 BMS1P17-202ENST00000416720 316 ntBASIC4.75□□□□□ -1.65
ATF4P18848 CYP4F29P-201ENST00000420685 446 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL139396.1-201ENST00000421137 167 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL669831.1-202ENST00000428504 417 ntBASIC4.75□□□□□ -1.65
ATF4P18848 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.75□□□□□ -1.65
ATF4P18848 CYCSP6-201ENST00000434498 302 ntBASIC4.75□□□□□ -1.65
ATF4P18848 HSPD1P21-201ENST00000436541 245 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.75□□□□□ -1.65
ATF4P18848 GTF2IP13-201ENST00000438487 386 ntBASIC4.75□□□□□ -1.65
ATF4P18848 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 EIF5AP4-201ENST00000441206 465 ntBASIC4.75□□□□□ -1.65
ATF4P18848 GAPDHP23-201ENST00000444823 993 ntBASIC4.75□□□□□ -1.65
ATF4P18848 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 ACA64.4-201ENST00000459070 127 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC022795.1-201ENST00000473808 480 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC012181.1-201ENST00000479895 423 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL160314.1-201ENST00000490836 438 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC113367.2-201ENST00000505749 160 ntBASIC4.75□□□□□ -1.65
ATF4P18848 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 RNA5SP418-201ENST00000515951 117 ntBASIC4.75□□□□□ -1.65
ATF4P18848 SNORA14.1-201ENST00000516113 141 ntBASIC4.75□□□□□ -1.65
ATF4P18848 SNORA70.16-201ENST00000516390 95 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RNU6-256P-201ENST00000516747 97 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 CYCSP27-201ENST00000527643 293 ntBASIC4.75□□□□□ -1.65
ATF4P18848 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.75□□□□□ -1.65
ATF4P18848 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC4.75□□□□□ -1.65
ATF4P18848 AC126615.2-201ENST00000553003 515 ntBASIC4.75□□□□□ -1.65
ATF4P18848 MTCO3P23-201ENST00000561363 289 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.75□□□□□ -1.65
ATF4P18848 RN7SL652P-201ENST00000577769 300 ntBASIC4.75□□□□□ -1.65
ATF4P18848 RN7SL435P-201ENST00000584418 282 ntBASIC4.75□□□□□ -1.65
ATF4P18848 MIR3942-201ENST00000585264 109 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC098826.3-201ENST00000603823 466 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AC104662.1-201ENST00000604448 511 ntBASIC4.75□□□□□ -1.65
ATF4P18848 DUSP12P1-201ENST00000612874 516 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL442067.2-201ENST00000614033 363 ntBASIC4.75□□□□□ -1.65
ATF4P18848 AL133216.2-202ENST00000634512 349 ntBASIC4.75□□□□□ -1.65
ATF4P18848 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.75□□□□□ -1.65
ATF4P18848 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.75□□□□□ -1.65
ATF4P18848 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.75□□□□□ -1.65
ATF4P18848 MAPK10-320ENST00000641462 6696 ntBASIC4.75□□□□□ -1.65
ATF4P18848 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
ATF4P18848 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.75□□□□□ -1.65
ATF4P18848 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
ATF4P18848 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.74□□□□□ -1.65
ATF4P18848 Y_RNA.58-201ENST00000362807 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 RNU6-254P-201ENST00000363377 107 ntBASIC4.74□□□□□ -1.65
ATF4P18848 Y_RNA.154-201ENST00000363624 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 SNORA43.1-201ENST00000364863 140 ntBASIC4.74□□□□□ -1.65
ATF4P18848 RNY3P1-201ENST00000365085 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 RNY3-201ENST00000365484 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
ATF4P18848 Y_RNA.387-201ENST00000383918 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 Y_RNA.490-201ENST00000384413 102 ntBASIC4.74□□□□□ -1.65
ATF4P18848 MIR450B-201ENST00000401182 78 ntBASIC4.74□□□□□ -1.65
ATF4P18848 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.74□□□□□ -1.65
ATF4P18848 AC063979.1-201ENST00000415539 377 ntBASIC4.74□□□□□ -1.65
ATF4P18848 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
ATF4P18848 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.74□□□□□ -1.65
ATF4P18848 AC091390.3-201ENST00000426478 338 ntBASIC4.74□□□□□ -1.65
ATF4P18848 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.74□□□□□ -1.65
ATF4P18848 AL592045.1-201ENST00000429867 352 ntBASIC4.74□□□□□ -1.65
ATF4P18848 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
ATF4P18848 RPL23AP69-201ENST00000431134 458 ntBASIC4.74□□□□□ -1.65
ATF4P18848 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.74□□□□□ -1.65
ATF4P18848 CYCSP24-201ENST00000445119 316 ntBASIC4.74□□□□□ -1.65
ATF4P18848 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.74□□□□□ -1.65
ATF4P18848 AC005077.1-201ENST00000449226 375 ntBASIC4.74□□□□□ -1.65
ATF4P18848 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC4.74□□□□□ -1.65
ATF4P18848 AC107399.1-201ENST00000451226 265 ntBASIC4.74□□□□□ -1.65
ATF4P18848 AC233279.1-201ENST00000455300 423 ntBASIC4.74□□□□□ -1.65
ATF4P18848 RPL21P104-201ENST00000464143 478 ntBASIC4.74□□□□□ -1.65
ATF4P18848 RN7SL273P-201ENST00000481561 299 ntBASIC4.74□□□□□ -1.65
ATF4P18848 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms