Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC9.57□□□□□ -0.88
MSH5O43196 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC9.57□□□□□ -0.88
MSH5O43196 AL513218.1-201ENST00000606527 391 ntBASIC9.57□□□□□ -0.88
MSH5O43196 MIAT_exon1.1-201ENST00000617016 135 ntBASIC9.57□□□□□ -0.88
MSH5O43196 MESTIT1_1.1-201ENST00000618871 140 ntBASIC9.57□□□□□ -0.88
MSH5O43196 MIR665-201ENST00000635949 72 ntBASIC9.57□□□□□ -0.88
MSH5O43196 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 Y_RNA.52-201ENST00000362760 96 ntBASIC9.56□□□□□ -0.88
MSH5O43196 RNU1-133P-201ENST00000364867 167 ntBASIC9.56□□□□□ -0.88
MSH5O43196 U3.19-201ENST00000390893 196 ntBASIC9.56□□□□□ -0.88
MSH5O43196 MIR1266-201ENST00000408125 84 ntBASIC9.56□□□□□ -0.88
MSH5O43196 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC9.56□□□□□ -0.88
MSH5O43196 SRP68P2-201ENST00000456184 254 ntBASIC9.56□□□□□ -0.88
MSH5O43196 RNU6-1198P-201ENST00000516904 67 ntBASIC9.56□□□□□ -0.88
MSH5O43196 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 ASB8-207ENST00000536953 923 ntTSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 AC084364.2-201ENST00000546924 395 ntBASIC9.56□□□□□ -0.88
MSH5O43196 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC9.56□□□□□ -0.88
MSH5O43196 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC9.56□□□□□ -0.88
MSH5O43196 AC092960.1-201ENST00000604762 351 ntBASIC9.56□□□□□ -0.88
MSH5O43196 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC9.56□□□□□ -0.88
MSH5O43196 AC233280.20-201ENST00000637412 416 ntBASIC9.56□□□□□ -0.88
MSH5O43196 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC9.56□□□□□ -0.88
MSH5O43196 AC015799.1-201ENST00000622996 3122 ntBASIC9.56□□□□□ -0.88
MSH5O43196 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC9.56□□□□□ -0.88
MSH5O43196 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
MSH5O43196 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC9.55□□□□□ -0.88
MSH5O43196 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
MSH5O43196 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC9.55□□□□□ -0.88
MSH5O43196 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 RNU6-144P-201ENST00000383951 107 ntBASIC9.55□□□□□ -0.88
MSH5O43196 RNU6-1080P-201ENST00000383982 107 ntBASIC9.55□□□□□ -0.88
MSH5O43196 RNU1-56P-201ENST00000391303 164 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC9.55□□□□□ -0.88
MSH5O43196 NDUFB4P8-201ENST00000435351 367 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AC016027.4-201ENST00000450866 277 ntBASIC9.55□□□□□ -0.88
MSH5O43196 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC9.55□□□□□ -0.88
MSH5O43196 GEMIN2P1-201ENST00000454246 752 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AL591473.1-201ENST00000464297 313 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC9.55□□□□□ -0.88
MSH5O43196 SCARNA18.2-201ENST00000516882 84 ntBASIC9.55□□□□□ -0.88
MSH5O43196 TOMM20P1-201ENST00000534518 427 ntBASIC9.55□□□□□ -0.88
MSH5O43196 CR383656.7-201ENST00000548164 174 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC9.55□□□□□ -0.88
MSH5O43196 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC9.55□□□□□ -0.88
MSH5O43196 AC034229.2-201ENST00000566945 2508 ntBASIC9.55□□□□□ -0.88
MSH5O43196 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC9.55□□□□□ -0.88
MSH5O43196 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 TMCC1P1-201ENST00000518897 1980 ntBASIC9.55□□□□□ -0.88
MSH5O43196 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC9.55□□□□□ -0.88
MSH5O43196 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
MSH5O43196 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC9.55□□□□□ -0.88
MSH5O43196 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
MSH5O43196 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
MSH5O43196 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC9.54□□□□□ -0.88
MSH5O43196 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC9.54□□□□□ -0.88
MSH5O43196 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC9.54□□□□□ -0.88
MSH5O43196 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
MSH5O43196 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
MSH5O43196 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
MSH5O43196 Y_RNA.94-201ENST00000363068 106 ntBASIC9.54□□□□□ -0.88
MSH5O43196 MIR555-201ENST00000384987 96 ntBASIC9.54□□□□□ -0.88
MSH5O43196 RNA5SP23-201ENST00000391006 105 ntBASIC9.54□□□□□ -0.88
MSH5O43196 FAUP2-201ENST00000394301 401 ntBASIC9.54□□□□□ -0.88
MSH5O43196 RPL12P11-201ENST00000439970 501 ntBASIC9.54□□□□□ -0.88
MSH5O43196 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC9.54□□□□□ -0.88
MSH5O43196 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC9.54□□□□□ -0.88
MSH5O43196 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
MSH5O43196 RN7SL350P-201ENST00000492591 299 ntBASIC9.54□□□□□ -0.88
MSH5O43196 AC107958.1-201ENST00000556576 290 ntBASIC9.54□□□□□ -0.88
MSH5O43196 MIR4310-201ENST00000582950 57 ntBASIC9.54□□□□□ -0.88
MSH5O43196 AC053481.4-201ENST00000583164 216 ntBASIC9.54□□□□□ -0.88
MSH5O43196 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
MSH5O43196 AC104581.5-201ENST00000624171 7141 ntBASIC9.54□□□□□ -0.88
MSH5O43196 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms